Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1366
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    31   0.51 
U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    30   0.89 
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    30   0.89 
Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    28   2.7  
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    27   8.3  

>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 21/86 (24%), Positives = 40/86 (46%)
 Frame = -3

Query: 327 LNARSTSILVRGASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCR 148
           +++ +++I +  +S  +  S T+ A + L  + ++T   T A NG   S  G+  +TTC+
Sbjct: 175 VSSTTSNISLTSSSTQSYSSSTAGATSSLFTI-KVTQSTTAAGNGQGGSGSGSA-TTTCK 232

Query: 147 TARRAYSKARMACDTGGKASWLLKAW 70
            +    S    A     K+  L   W
Sbjct: 233 CSAGDVSATTAASACSEKSGCLKNQW 258


>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 245 TAMAFEVTLSPFPSDAPLTSMDVERALSFXPXRGTA 352
           + +A   T SP PSD    S+DV+R L+F   R  A
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 245 TAMAFEVTLSPFPSDAPLTSMDVERALSFXPXRGTA 352
           + +A   T SP PSD    S+DV+R L+F   R  A
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical
           protein W09D10.1 protein.
          Length = 495

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -3

Query: 438 ASYNIKRPVADISQHPNLDSEQPPELLKXAVPRXGXKLNARSTSILVRGASLGNGDSVTS 259
           + Y  KR +     +P +D+ Q P+ L  A  + G  +     +I  RG+S  NG S  S
Sbjct: 120 SKYEQKRYILRDFVYPRVDASQLPKSLSQAQKKVGTPV----VNIASRGSSSSNGHSTAS 175

Query: 258 NAIA 247
            A A
Sbjct: 176 AAAA 179


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -3

Query: 213 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGGKAS 88
           ++  S G  SSSRG+ Y  T   R+++R+ S++R    +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147


>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
            factor) relatedprotein 8 protein.
          Length = 2329

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 229  PYPNENCDGV*SHAVSVPERRSSDXYGRRARVELXSXSWXRGLQELWRLFAVEVRMLGNV 408
            P+  E  D V   A    +R+ ++   RR  +E    SW RG+  +  LF  +   L   
Sbjct: 1367 PWEAEFVDSVRVWAEYALKRQEANAQNRRLTLEDLDDSWDRGIPRINTLFQKDRHTLAYD 1426

Query: 409  GDW 417
              W
Sbjct: 1427 KGW 1429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,039,021
Number of Sequences: 27780
Number of extensions: 137869
Number of successful extensions: 378
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)