Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1363
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.3  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   2.3  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   3.1  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   4.1  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    25   7.1  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   9.4  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   9.4  

>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 379 PGLNLRTLSTFGHHRNRLCMVKLTGY 302
           P ++L  +  FG   N +CM +L GY
Sbjct: 234 PSISLENVLAFGDGANDVCMFELAGY 259


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 409 EESIAKAVRYSNVVINLVGRDYETKNFKYND 501
           +ESI+ +   SN+ ++L  R Y+TK  K+N+
Sbjct: 166 KESISSSTN-SNIKLHLAARKYQTKPEKFNE 195


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 101 TSKLLHLNGSMSVVYIKAAN-YSSDRKPNLAAYKRGTGGRSSFNGIVATVFGSPDLSDA 274
           + K LH+   + +      N YSS R    A+   GT    SFN  ++++ GS ++  A
Sbjct: 242 SEKFLHIVQFLRISSFNTKNDYSSSRSKTTASSSNGTFASPSFN--ISSLSGSSNIGTA 298


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
 Frame = +1

Query: 523 ELPESAEKKELRD-----SFICLI*NAEEH 597
           +L E+ EKKEL+D     +FIC++  A EH
Sbjct: 682 QLEETYEKKELKDISTSFAFICVLHLANEH 711


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 638 FSQADGFFRTRGFGCSSAF*IRQMNESLNSFFSADSGNSS 519
           F Q  GF +   FG S +   R  NESL   +   +GN+S
Sbjct: 28  FYQKLGFKKVASFGTSDSDNARVCNESLREDWMHVAGNNS 67


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 370 LGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 477
           L +   +P HL+ EE    A +Y N + ++   +YE
Sbjct: 272 LQKAFLSPDHLIVEEDFYNASKYLNAISDIPFLNYE 307


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = +1

Query: 367 DLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVMV 516
           D     FT    + EES+  +      ++ ++G+  +T+NF  +D   ++
Sbjct: 573 DFAYEFFTQAFSIYEESVLDSELQYQQLLMIIGKLQKTRNFSVDDYDTLI 622


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,005
Number of Sequences: 5004
Number of extensions: 53888
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)