Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1351
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    26   2.7  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    26   2.7  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    25   4.8  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   6.3  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   8.4  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    25   8.4  

>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 23  PCNYVYKVFILNTILLFFRTLSCKY 97
           P  +  ++ I+NTI++ F T+ C Y
Sbjct: 30  PLTWPIRIRIINTIIISFMTMLCMY 54


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 306 DNRQEHDSQPQEKVCSTTKDVFWDRSKIRLLLKLCLEDRFKNINK-QKTL 452
           D+  + D    EK+     +   D++ ++L+ K CLE+R + + +  KTL
Sbjct: 734 DSIGDGDVTEDEKISIARLEANIDKALLQLIQKACLEERIERVYELTKTL 783


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 389 YFASIPKDVFSSTTNFFLWLAIMFLTIIGGSFMWINCLF 273
           + AS+ K  +    + F W  +  L ++G S   IN LF
Sbjct: 164 FVASLKKGNYKFQFSQFCWTHMTLLLVVGQSHFMINNLF 202


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 134 MNNPPNQSYWFVLREDQSNVILSTNNFVNQN 226
           M N P+  YW  L    S ++ ++ N+++ +
Sbjct: 121 MANDPSMKYWLKLTNQLSGLLCASLNYIDSS 151


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 149 NQSYWFVLREDQSNVILSTNNFVNQNPQIPLQ 244
           N+S W +  +++  +I + N ++  NP  P+Q
Sbjct: 306 NRSPWTI--QEKEKLIKTVNQYLQSNPSSPIQ 335


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 311 IIGGSFMWINCLFSPVSTTIL 249
           IIGGSF++ + L+ P++  +L
Sbjct: 363 IIGGSFLYGSALYHPLTKNLL 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,667
Number of Sequences: 5004
Number of extensions: 39612
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)