Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1351
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0475 - 3818121-3820565                                           28   3.6  
03_05_0855 + 28267231-28267603,28267725-28267966,28268071-282681...    28   4.8  
11_01_0788 + 6599962-6602700                                           27   6.3  
03_01_0397 + 3086142-3086489,3087097-3087252,3088043-3088201,308...    27   8.4  
02_02_0640 - 12528075-12528363,12531326-12532311                       27   8.4  

>05_01_0475 - 3818121-3820565
          Length = 814

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 122 LKMDMNNPPNQSYWFVLREDQSNVILS-TNNFVNQNPQ 232
           + +  +NPPN  YW    E  S+ ++S  N  +N NP+
Sbjct: 209 IDLSRSNPPNM-YWSWSSEKSSSALISLLNQLININPE 245


>03_05_0855 +
           28267231-28267603,28267725-28267966,28268071-28268193,
           28268507-28268623,28268739-28268921,28269017-28269158,
           28269379-28269544,28270194-28270212
          Length = 454

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = -3

Query: 446 FLFIYVFESVF*AQFKE*SYFASIPKDVFSSTTNFFLWLAIMFLTIIGGSFMWINCLFSP 267
           FL +  FE V    F    +F      V  + T+F  W   MFL     SF WI  L++ 
Sbjct: 278 FLALLSFE-VLVVAFSSVLWFLFKDSYVDVNDTSFESWTFGMFLDT-ATSFPWIPALYTG 335

Query: 266 VSTTILSLEVE 234
           V +T+L +  E
Sbjct: 336 VFSTVLCMWAE 346


>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 147 GGLFISIFNEKYLNN--YKYLHDSVLKNRRIVFSMKTLYT*LQGY 19
           GGLF S+  E Y+ N  YK L D ++ N  I   +   Y  L G+
Sbjct: 382 GGLFSSVKLESYIWNEMYKQLGDELVNNDHIRAILNLSYRDLPGH 426


>03_01_0397 +
           3086142-3086489,3087097-3087252,3088043-3088201,
           3088305-3088388,3089266-3089348,3089486-3089531,
           3089825-3089912,3090009-3090178,3090317-3090430,
           3090497-3090604,3090987-3091202
          Length = 523

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 342 KVCSTTKDVFWDRSKIRLLLKLCLEDRFKNINKQKTL 452
           ++ + T+D   D  K+R+ + L L++ FK+  K+K +
Sbjct: 187 QISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVM 223


>02_02_0640 - 12528075-12528363,12531326-12532311
          Length = 424

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 202 TKYHIALIFSKYKPIALIWRVVHIH 128
           +K  +AL F  Y P A +WRV+  H
Sbjct: 381 SKKRLALEFQVYNPAAKMWRVLTTH 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,704,821
Number of Sequences: 37544
Number of extensions: 205426
Number of successful extensions: 436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)