Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1350
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840...    29   3.5  
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716...    28   6.2  

>07_03_0602 +
           19881998-19882217,19882303-19882496,19883719-19884039,
           19885016-19885244,19885554-19885653,19886413-19886539,
           19886603-19886780,19886859-19886917,19887082-19887568,
           19887682-19887836,19887930-19888100,19888181-19888270,
           19888714-19888872,19888940-19889223,19889435-19889498
          Length = 945

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 413 ESEEPWRPLKSF*KRNLKRQRCRK 484
           + ++PWRPL      NLK + CRK
Sbjct: 615 DDDDPWRPLNPHEPGNLKIRTCRK 638


>01_03_0216 +
           13870364-13870472,13871406-13871477,13871603-13871668,
           13871767-13871823,13871917-13871984,13872068-13872149,
           13872445-13872500,13872645-13872947,13873042-13873128,
           13873199-13873373,13873481-13873602,13873689-13873852,
           13873925-13874179,13874312-13874433,13874542-13874663,
           13875111-13875259,13875346-13875484,13875715-13875750
          Length = 727

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +2

Query: 299 MLKENNFERSSTLSECCIHNVNKVKSQMF*LREIEKRIESEEPWRPLKSF*KRNLKRQRC 478
           +L    F+    + E  I NV K+K Q+F   ++EK   S        S    NL  ++ 
Sbjct: 385 VLDYERFKDVDLVIEAVIENV-KLKQQIF--SDLEKYCPSHCVLATNTSTIDLNLIGEKT 441

Query: 479 RKKDRLTGSH 508
           R KDR+ G+H
Sbjct: 442 RSKDRIVGAH 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,947,073
Number of Sequences: 37544
Number of extensions: 292745
Number of successful extensions: 826
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)