Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1348
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   105   3e-23
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    29   3.1  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   4.1  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80451-3|AAB37838.1|   71|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U50192-2|AAA91245.1|   71|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna bi...    27   9.4  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    27   9.4  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   9.4  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    27   9.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  105 bits (251), Expect = 3e-23
 Identities = 47/56 (83%), Positives = 47/56 (83%)
 Frame = +3

Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGSWHRRVN 422
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP      WHR VN
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVN 115



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +1

Query: 82  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58



 Score = 32.3 bits (70), Expect = 0.25
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 458 VAATGVPAARSG*RTHYEKIPELPLXVADKVQEINKT 568
           +AA+G+PA         +++ E+PL V+DKV+   KT
Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKT 163


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 400 PPGLRGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 272
           P G+ GA   PP    P AP P +++PPP   G     R P+ H
Sbjct: 152 PRGMPGAY--PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 400 PPGLRGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 272
           P G+ GA   PP    P AP P +++PPP   G     R P+ H
Sbjct: 152 PRGMPGAY--PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 303 PRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGSW 407
           PR RGGG  R G+G       GG  F PR  GG +
Sbjct: 6   PRGRGGGGFRGGRG-------GGSGFTPRGGGGGF 33



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 312 RGG--GTHRSGQGAFGNMCRGGRMFAPRSPG 398
           RGG  G    G+G F    RGG  F+PR  G
Sbjct: 123 RGGDRGVANRGRGDFSGGSRGGNKFSPRGGG 153


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 254 TNQC--RIMGYRTCCCPNSAC 310
           TN+C  +  G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 254 TNQC--RIMGYRTCCCPNSAC 310
           TN+C  +  G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = -2

Query: 480 AGTPVAATGCLPRPLSAVGG*RDGASCRQGFVGRTYVHHDTCYRRHPDRTYGYHHHGHAE 301
           AGT     G  P P + V G         G       HHD  +++H  + +  HHHGH  
Sbjct: 86  AGTGFGNAGYTPSPPAGVPG---NGFVPGGVDVHDDHHHDGHHKKHGRKEHD-HHHGH-H 140

Query: 300 FGQQH 286
            G  H
Sbjct: 141 HGHHH 145


>Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical
           protein ZK792.5 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 315 GGGTHRSGQGAFGNMCRGGRMFAPRSPGGS 404
           GGG  R G G F    RGGR    R  GG+
Sbjct: 58  GGGRGRGGDGGFRRNDRGGRGGGGRGFGGN 87


>U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical
           protein F53A9.7 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 393 GFVGRTYVHHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHW 259
           G++  T VH D  +  H D     HHH  +  G+ H  +  ++H+
Sbjct: 29  GYMPPTVVHTDGGHHGHVDT----HHHEESHHGEHHGGHHGVQHY 69


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 130 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 29
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical protein
            F48F5.1 protein.
          Length = 1291

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = -2

Query: 411  GASCRQGFVGRTYVHHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHW 259
            G      F+G  Y+  +     HPD T G +     EF  + ++ P   +W
Sbjct: 1163 GIGRTMSFIGSEYLAREI--EHHPDTTLGKNMENMREFRSKGIQTPQQLYW 1211


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -2

Query: 336  RTYGYHHHGHAEFGQQHVRYPMIRHWFVTSLLAHAVGLPRVLGHRNVNIIDQVRTYGRLE 157
            R  GY+      +     RYP +R    + L + A  LPR++  R+ + +   R + R  
Sbjct: 1376 RPEGYYEPPVQTYSPVPPRYPTLRRVDDSPLRSRAKSLPRIISPRHEHFVR--RPHSRNS 1433

Query: 156  YERE 145
            Y  E
Sbjct: 1434 YSNE 1437


>U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical
           protein F54H5.5 protein.
          Length = 662

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 300 FGQQHVRYPMIRHWFVTSLLAHAV--GLPRVLGHRNVNIID 184
           F  + V  P+   WFVTSL+  AV   +   + H  V ++D
Sbjct: 386 FSPETVEDPVTNGWFVTSLIREAVEENIKEAICHILVQLLD 426


>U80451-3|AAB37838.1|   71|Caenorhabditis elegans Hypothetical
           protein F11G11.8 protein.
          Length = 71

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 315 GGGTHRSGQGAFGNMCRGGRMFAPRS 392
           GGG  +  QG+ GN   GG++F  R+
Sbjct: 38  GGGQQQQNQGSGGNTNPGGQVFKART 63


>U50192-2|AAA91245.1|   71|Caenorhabditis elegans Hypothetical
           protein T23B7.1 protein.
          Length = 71

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 315 GGGTHRSGQGAFGNMCRGGRMFAPRS 392
           GGG  +  QG+ GN   GG++F  R+
Sbjct: 38  GGGQQQQNQGSGGNTNPGGQVFKART 63


>U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 7 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 234 REQGGWSQTSAESWGTGRAVARIPRVRGGG--THRSGQGAFGNMCRGGR-MFAPRSPGGS 404
           RE+ G      +S+  G    R  R   GG   +R G G FG    GGR  F  RS GG 
Sbjct: 227 RERSGSRDRRQDSYRNGGGNDRDRRESSGGFRDNRGGGGGFGG---GGRDRFNDRSGGGG 283

Query: 405 W 407
           +
Sbjct: 284 Y 284


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 315  GGGTHRSGQGAFGNMCRGGRMFAPRS--PGG 401
            GGG  R G G+   M RGGR+  P    PGG
Sbjct: 2157 GGGGGRGGYGSTLVMPRGGRVVRPAGTLPGG 2187


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +1

Query: 67  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 240
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 315  GGGTHRSGQGAFGNMCRGGRMFAPRS--PGG 401
            GGG  R G G+   M RGGR+  P    PGG
Sbjct: 2157 GGGGGRGGYGSTLVMPRGGRVVRPAGTLPGG 2187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,816,511
Number of Sequences: 27780
Number of extensions: 286094
Number of successful extensions: 967
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)