Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1345
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 155 8e-39
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 105 8e-24
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 46 4e-06
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 41 2e-04
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 28 1.5
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 27 2.6
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.5
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 26 4.5
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 6.0
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 25 7.9
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 155 bits (375), Expect = 8e-39
Identities = 68/84 (80%), Positives = 76/84 (90%)
Frame = +3
Query: 9 FLDNMGFLEVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVY 188
F D+ F+EVETP+MNM+ GGATAKPF+THHN+L+MDLYMRIAPELY KMLVVGGLDRVY
Sbjct: 261 FFDSRDFMEVETPMMNMIAGGATAKPFVTHHNDLDMDLYMRIAPELYLKMLVVGGLDRVY 320
Query: 189 EIGRQFRNEGIDLTHNPEFTTCNF 260
EIGRQFRNEG DLTHNPEFT+ F
Sbjct: 321 EIGRQFRNEGADLTHNPEFTSIEF 344
Score = 116 bits (280), Expect = 2e-27
Identities = 62/132 (46%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Frame = +2
Query: 257 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDFTPPFARVPMMAT 436
FY AYADY DLM TE +LSG+V+ + GSYKV YHPEGPEG + E+DF+ P+ R+ M+
Sbjct: 344 FYQAYADYYDLMDTTEELLSGLVKDLTGSYKVPYHPEGPEGPKWELDFSRPWRRINMIEY 403
Query: 437 LERVLNVKLPAPDKLDTPEANDFLTTYATLIRMSARHRGPPR--GSWINWFL-YFWREEC 607
LE LN K P D+L TPEAN FL L PP+ ++ + F EC
Sbjct: 404 LEEKLNTKFPPGDQLHTPEANAFL---RDLCAKHGVECAPPQTCSRLLDKLVGEFIESEC 460
Query: 608 INPHLLXDHPQI 643
INP + HPQ+
Sbjct: 461 INPTFIIGHPQM 472
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 105 bits (251), Expect = 8e-24
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +3
Query: 9 FLDNMGFLEVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVY 188
F GFLEVETP+++ GGATA+PFIT + L +R APEL+ K LV+GG++RV+
Sbjct: 217 FFSERGFLEVETPILSHHFGGATARPFITSDIH-KLPLTLRCAPELWLKQLVIGGMNRVF 275
Query: 189 EIGRQFRNEGIDLTHNPEFTTC 254
E+G+ FRNEGID THNPEFT+C
Sbjct: 276 ELGKNFRNEGIDATHNPEFTSC 297
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 9 FLDNMGFLEVETPLM-NMVPGGATAKPFITHHNELNMDLYMRI--APELYHKMLVVGGLD 179
F ++ F EVETPL+ P GA + F+ + LN + + +P+ Y ++L+ G+
Sbjct: 172 FFNDREFCEVETPLLFKSTPEGA--REFVVP-SRLNPGKFYALPQSPQQYKQILMASGIG 228
Query: 180 RVYEIGRQFRNEGIDLTHNPEFT 248
Y+I R FR+E + PEFT
Sbjct: 229 NYYQIARCFRDEDLRFDRQPEFT 251
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 9 FLDNMGFLEVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVY 188
FL + F E+ TP M+ + F + D ++ +P+LY +ML+ +RV+
Sbjct: 267 FLLSNSFNEIHTPKMSGASSEGGSNVFKIQY--FKTDGFLSQSPQLYKQMLIAADRERVF 324
Query: 189 EIGRQFRNEGID-LTHNPEFT 248
EIG FR E + H EFT
Sbjct: 325 EIGPVFRAEDSNTYRHMTEFT 345
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 93 THHNELNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEF 245
TH ++ ++ ++A +H + + I R FRNE +D TH EF
Sbjct: 327 THTTAVSANMLYKLAQNGFHPA-------KYFSIDRVFRNETVDATHLAEF 370
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 224 VDTFISELSSNFIYPIESTHNKHFVIKLRSYSH 126
+DTF + ++N PI+ST + H V RS S+
Sbjct: 315 IDTFSLDEAANIQIPIQSTSDNHTVTVDRSLSN 347
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -2
Query: 457 HVKNTFQCCHHR-YSSKGWCEIDFYFLTL-WSFWMIFDLVGSM 335
H T CC ++ K W + FYF L WM D+ G +
Sbjct: 121 HAFTTTWCCMFELFAEKKWMIMSFYFPYLAIPLWMAIDMGGRL 163
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 111 NMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGI 221
N+D+ MRI P L + DRVY +G RNE I
Sbjct: 430 NLDIRMRITPLLTG----IPQPDRVYVVGGASRNEAI 462
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 413 ARVPMMATLERVLNVKLPAPDKLDTPEAND 502
AR P+ L++V KLP PD LDT + +D
Sbjct: 1369 ARYPIFWGLKKV--GKLPNPDPLDTAQLDD 1396
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 269 YADYNDLMTITESILSGMVQSIHGSYKVKY 358
Y ++N M ITE +LS ++ HG + +Y
Sbjct: 123 YPNWNYEMMITEKLLSADARNFHGWHYRRY 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,539
Number of Sequences: 5004
Number of extensions: 69205
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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