Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1345
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 158 3e-39
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 56 2e-10
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 49 4e-06
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 36 0.041
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 35 0.071
11_08_0061 + 28117007-28117846 29 3.5
11_08_0060 + 28108548-28109402 29 4.7
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 158 bits (384), Expect = 3e-39
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +3
Query: 9 FLDNMGFLEVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVY 188
FLD + FLEVETP+MNM+ GGA A+PF+THHNELNM LYMRIAPELY K LVVGGLDRVY
Sbjct: 284 FLDGLDFLEVETPMMNMIAGGAAARPFVTHHNELNMRLYMRIAPELYLKELVVGGLDRVY 343
Query: 189 EIGRQFRNEGIDLTHNPEFTTCNF 260
EIG+QFRNEGIDLTHNPEFTTC F
Sbjct: 344 EIGKQFRNEGIDLTHNPEFTTCEF 367
Score = 106 bits (255), Expect = 1e-23
Identities = 54/129 (41%), Positives = 73/129 (56%)
Frame = +2
Query: 257 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDFTPPFARVPMMAT 436
FYMAYADYNDL+ +TE++LSGMV+ + G YK+KYH G E IEIDFTPPF ++ M+
Sbjct: 367 FYMAYADYNDLIELTETMLSGMVKELTGGYKIKYHANGVEKPPIEIDFTPPFRKIDMIEE 426
Query: 437 LERVLNVKLPAPDKLDTPEANDFLTTYATLIRMSARHRGPPRGSWINWFLYFWREECINP 616
LE + KL P L + EAN +L + +F E C+NP
Sbjct: 427 LEAM--AKLNIPKDLSSDEANKYLIDACAKYDVKCPPPQTTTRLLDKLVGHFLEETCVNP 484
Query: 617 HLLXDHPQI 643
+ +HP+I
Sbjct: 485 TFIINHPEI 493
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 55.6 bits (128), Expect(2) = 2e-10
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 162 VVGGLDRVYEIGRQFRNEGIDLTHNPEFTT 251
VVGGL++VYEIGR FRNEGI HNPEFTT
Sbjct: 299 VVGGLEKVYEIGRIFRNEGISTRHNPEFTT 328
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 260 YMAYADYNDLMTITESILSGMVQSIHGSYKVKY 358
Y AY+DY +M + E I++ + HG +V Y
Sbjct: 332 YEAYSDYESMMNLAEEIVTRCAMATHGKLRVDY 364
Score = 27.1 bits (57), Expect(2) = 2e-10
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 12 LDNMGFLEVETPLMNMVPG 68
+++ GF+EVETP++ +V G
Sbjct: 284 MESFGFIEVETPVLQVVGG 302
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +3
Query: 15 DNMGFLEVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYEI 194
D F+E+ETP+++ + + M + +P+L+ +ML+V G ++ Y+I
Sbjct: 247 DRHDFVEIETPVLSKSTPEGARDYLVPSRVQPGMFYALPQSPQLFKQMLMVSGFEKYYQI 306
Query: 195 GRQFRNEGIDLTHNPEFT 248
R FR+E + PEFT
Sbjct: 307 ARCFRDEDLRADRQPEFT 324
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 35.5 bits (78), Expect = 0.041
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 135 APELYHKMLVVGGLDRVYEIGRQFRNEGIDLTH 233
+P+LY +M + GG +RV+E+G FR E + TH
Sbjct: 297 SPQLYKQMAICGGFERVFEVGPVFRAENSN-TH 328
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +3
Query: 24 GFLEVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQ 203
GF+ + TP ++ G + + + + +P+L+ +M + GG +RV+E+G
Sbjct: 221 GFVGIHTP--KLIGGSSEGGAAVFKLDYNGQPACLAQSPQLHKQMAICGGFERVFEVGPV 278
Query: 204 FRNE 215
FR E
Sbjct: 279 FRAE 282
>11_08_0061 + 28117007-28117846
Length = 279
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 8 ILGQYGLPRSGNPTYEYGSRWRHCQT 85
+ G+YGL SG+P G+ +HCQ+
Sbjct: 63 VKGRYGLDISGHPVAAVGADIKHCQS 88
>11_08_0060 + 28108548-28109402
Length = 284
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 14 GQYGLPRSGNPTYEYGSRWRHCQT 85
G+YGL SG+P G+ +HCQ+
Sbjct: 71 GRYGLDFSGHPVAAVGADIKHCQS 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,310,316
Number of Sequences: 37544
Number of extensions: 464925
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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