Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1345
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 163 1e-40
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 163 1e-40
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 163 1e-40
Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical pr... 52 4e-07
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 41 7e-04
AL021474-6|CAI79259.1| 261|Caenorhabditis elegans Hypothetical ... 39 0.004
Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical pr... 32 0.45
U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl ... 28 7.4
AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl ... 28 7.4
AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical... 27 9.8
AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical... 27 9.8
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso... 27 9.8
AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial... 27 9.8
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 163 bits (396), Expect = 1e-40
Identities = 68/84 (80%), Positives = 80/84 (95%)
Frame = +3
Query: 9 FLDNMGFLEVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVY 188
+LDN+GFLEVETP+MN + GGATAKPFITHHN+L+M+L++R+APELYHKMLVVGG+DRVY
Sbjct: 178 YLDNLGFLEVETPIMNQIAGGATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDRVY 237
Query: 189 EIGRQFRNEGIDLTHNPEFTTCNF 260
E+GR FRNEGIDLTHNPEFTTC F
Sbjct: 238 EVGRLFRNEGIDLTHNPEFTTCEF 261
Score = 95.9 bits (228), Expect = 2e-20
Identities = 56/133 (42%), Positives = 74/133 (55%), Gaps = 4/133 (3%)
Frame = +2
Query: 257 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEI-EIDFTPPFARVPMMA 433
FYMAYADY D++ +TE +LS MV SI G+YK++YHP GP + + E+DFTPPF RV M
Sbjct: 261 FYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRVHMYD 320
Query: 434 TLERVLNVKLPAPDKLDTPEANDFLTTYATLIRMSARHRGPPR--GSWINWFLYFWREEC 607
L L LP P L T EA + + L R + PR ++ + + E
Sbjct: 321 GLAEKLGATLPDPSTLHTEEARE---VFDKLCRDNNVDCSAPRTTARLLDKLVGEYLEST 377
Query: 608 -INPHLLXDHPQI 643
I+P L HPQI
Sbjct: 378 FISPTFLIGHPQI 390
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 163 bits (396), Expect = 1e-40
Identities = 68/84 (80%), Positives = 80/84 (95%)
Frame = +3
Query: 9 FLDNMGFLEVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVY 188
+LDN+GFLEVETP+MN + GGATAKPFITHHN+L+M+L++R+APELYHKMLVVGG+DRVY
Sbjct: 260 YLDNLGFLEVETPIMNQIAGGATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDRVY 319
Query: 189 EIGRQFRNEGIDLTHNPEFTTCNF 260
E+GR FRNEGIDLTHNPEFTTC F
Sbjct: 320 EVGRLFRNEGIDLTHNPEFTTCEF 343
Score = 95.9 bits (228), Expect = 2e-20
Identities = 56/133 (42%), Positives = 74/133 (55%), Gaps = 4/133 (3%)
Frame = +2
Query: 257 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEI-EIDFTPPFARVPMMA 433
FYMAYADY D++ +TE +LS MV SI G+YK++YHP GP + + E+DFTPPF RV M
Sbjct: 343 FYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRVHMYD 402
Query: 434 TLERVLNVKLPAPDKLDTPEANDFLTTYATLIRMSARHRGPPR--GSWINWFLYFWREEC 607
L L LP P L T EA + + L R + PR ++ + + E
Sbjct: 403 GLAEKLGATLPDPSTLHTEEARE---VFDKLCRDNNVDCSAPRTTARLLDKLVGEYLEST 459
Query: 608 -INPHLLXDHPQI 643
I+P L HPQI
Sbjct: 460 FISPTFLIGHPQI 472
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 163 bits (396), Expect = 1e-40
Identities = 68/84 (80%), Positives = 80/84 (95%)
Frame = +3
Query: 9 FLDNMGFLEVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVY 188
+LDN+GFLEVETP+MN + GGATAKPFITHHN+L+M+L++R+APELYHKMLVVGG+DRVY
Sbjct: 236 YLDNLGFLEVETPIMNQIAGGATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDRVY 295
Query: 189 EIGRQFRNEGIDLTHNPEFTTCNF 260
E+GR FRNEGIDLTHNPEFTTC F
Sbjct: 296 EVGRLFRNEGIDLTHNPEFTTCEF 319
Score = 95.9 bits (228), Expect = 2e-20
Identities = 56/133 (42%), Positives = 74/133 (55%), Gaps = 4/133 (3%)
Frame = +2
Query: 257 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEI-EIDFTPPFARVPMMA 433
FYMAYADY D++ +TE +LS MV SI G+YK++YHP GP + + E+DFTPPF RV M
Sbjct: 319 FYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRVHMYD 378
Query: 434 TLERVLNVKLPAPDKLDTPEANDFLTTYATLIRMSARHRGPPR--GSWINWFLYFWREEC 607
L L LP P L T EA + + L R + PR ++ + + E
Sbjct: 379 GLAEKLGATLPDPSTLHTEEARE---VFDKLCRDNNVDCSAPRTTARLLDKLVGEYLEST 435
Query: 608 -INPHLLXDHPQI 643
I+P L HPQI
Sbjct: 436 FISPTFLIGHPQI 448
>Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical
protein F10C2.6 protein.
Length = 593
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Frame = +3
Query: 12 LDNMGFLEVETP-LMNMVPGGATAKPFITHHNELNMDLYMRI--APELYHKMLVVGGLDR 182
++ GF++VETP L PGGA F+ N L + +P+ + ++L+VG +DR
Sbjct: 171 VEKSGFVDVETPTLFRRTPGGAAE--FVVPAPSPNQGLAYSLPQSPQQFKQLLMVGAIDR 228
Query: 183 VYEIGRQFRNEGIDLTHNPEFT 248
++I R +R+EG PEFT
Sbjct: 229 YFQIARCYRDEGSKGDRQPEFT 250
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 12 LDNMGFLEVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYE 191
LD GF+E+ P + P A F + Y+ +P+LY +M + G ++VY
Sbjct: 240 LDVRGFVEIMAPKIISAPSEGGANVFEVSY--FKGSAYLAQSPQLYKQMAIAGDFEKVYT 297
Query: 192 IGRQFRNEGIDL-THNPEF 245
IG FR E + H EF
Sbjct: 298 IGPVFRAEDSNTHRHMTEF 316
>AL021474-6|CAI79259.1| 261|Caenorhabditis elegans Hypothetical
protein Y32F6A.6 protein.
Length = 261
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 263 MAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDFTPPFARV 421
M + ND + E +++ +V SI S+ +KY + +EIDFTPPF R+
Sbjct: 174 MCNINLNDFQDLVEELITTLVYSIKRSFLIKY-------RSVEIDFTPPFKRL 219
Score = 31.5 bits (68), Expect = 0.60
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = +3
Query: 9 FLDNMGFLEVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVY 188
+L + FLE +MN + A +N+D ELY++MLV G++RV+
Sbjct: 103 YLYQLLFLETNRVIMNPI-----ALESFNKRQSINIDYVYSKMTELYNRMLVTQGIERVF 157
Query: 189 EIGRQFRNEGIDLTHNPEFTTCN 257
+ Q + + LT E + CN
Sbjct: 158 KWNSQ--RQPLVLT--AEISMCN 176
>Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical
protein ZC482.4 protein.
Length = 550
Score = 31.9 bits (69), Expect = 0.45
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 48 LMNMVPGGATAKPFITHHNELNMDLYMRIAPELYH--KMLVVGGLDRVYEIGRQFRNEGI 221
++N+V GG +H +L + P LY + +GG GR ++NE I
Sbjct: 425 VINLVTGGERIAIIQDNHPDLFKSRECDLFPYLYTFVNLTYIGG-----NCGRSYQNEDI 479
Query: 222 DLTHNPEFTTCNF 260
D+ + E+T NF
Sbjct: 480 DVYNGQEYTLVNF 492
>U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical
protein F10E7.9 protein.
Length = 574
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -2
Query: 127 MYKSMFNSL**VMNGLAVAPPGTIFISGVSTSRK 26
M+K++F+SL + +G P T F SGVS+S++
Sbjct: 517 MFKTVFSSLDSLRSGATTILPETTFTSGVSSSQQ 550
>AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform b protein.
Length = 496
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 180 RVYEIGRQFRNEGIDLTHNPEF 245
+++ I R FRNE +D TH EF
Sbjct: 348 KLFSIDRVFRNETLDATHLAEF 369
>AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform a protein.
Length = 552
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 180 RVYEIGRQFRNEGIDLTHNPEF 245
+++ I R FRNE +D TH EF
Sbjct: 404 KLFSIDRVFRNETLDATHLAEF 425
>AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 108 LNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEF 245
+N + +R + L+ GLD IG +R + +D TH P F
Sbjct: 145 VNHEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCF 190
>AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 108 LNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEF 245
+N + +R + L+ GLD IG +R + +D TH P F
Sbjct: 145 VNHEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCF 190
>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 2
protein.
Length = 1086
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 422 PMMATLERVLNVKLPAPDKLDTPEA-NDFLTTYATLIRMSARHRGPPRGSWINWFL 586
P M L RVL V L +K TP A LTT + R G S+++ F+
Sbjct: 503 PFMRVLHRVLTVGLDMSEKKTTPAAWRHLLTTTESFFRSVISVTGKEIPSFLSQFV 558
>AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial
phenylalanyl-tRNAsynthetase protein.
Length = 458
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 108 LNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEF 245
+N + +R + L+ GLD IG +R + +D TH P F
Sbjct: 145 VNHEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCF 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,787,783
Number of Sequences: 27780
Number of extensions: 396721
Number of successful extensions: 893
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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