Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1273
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    29   0.70 
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    26   5.0  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   6.6  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    26   6.6  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    26   6.6  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   8.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.7  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 219 QVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQ 350
           ++ I+   ++ ++  S++ E YD    EI++L      FD SV+
Sbjct: 838 KISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSVE 881


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 591 NPFFHDECDYFTMFT*SYRLNHGKCTLQFLKSVFRVAGAQSLIYNNFENILT 436
           +P F +    F   T    L+  +CTL+F KS+  +A A++++    E + T
Sbjct: 68  SPIFDNLESVFKKGTDVAILDFNQCTLKFRKSIVELAKARNMLLMFVEVVCT 119


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 405 LNLDMFKSVI*LIYFQNYYISRIALLLHGKRFSKIAKYIC 524
           LN D    V+ L  F++  I+ +ALL HGK    + K +C
Sbjct: 624 LNYDT-PPVLMLKLFKDAGITNLALLNHGKLHGVLTKIVC 662


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 566 SHSSWKNGFSHRSNEKTAKFAKEFAMGTL 652
           SHS     F   SNE+ +K  + FAM TL
Sbjct: 41  SHSHDDASFFDPSNEEASKLRESFAMDTL 69


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 264 SFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDMFKSVI*LI 443
           + L  M + +A+ + +LT           +ID      +L+  Q+PP +++ FKS+    
Sbjct: 261 NILNHMVETNAEYLMELTNKTKADVKGGTLIDYDGNVRLLEIAQVPPQHVEEFKSIKKFK 320

Query: 444 YF 449
           YF
Sbjct: 321 YF 322


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 640 CKFLCKFCRFFIRTMRKSIF 581
           C+++C  C F   T  KSIF
Sbjct: 6   CRYVCFCCAFISNTTSKSIF 25


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 564 YFTMFT*SYRLNHGKCTLQFLKSVFR 487
           +FT+FT +Y+L     TL FL  ++R
Sbjct: 334 FFTIFTNAYKLRQTNFTLDFLWVLWR 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,057
Number of Sequences: 5004
Number of extensions: 57401
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)