Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1273
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    30   2.0  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    30   2.0  
U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-lik...    29   3.5  
Z81496-6|CAB04070.2|  313|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF047656-8|AAC05109.2|  340|Caenorhabditis elegans Ligand-gated ...    29   4.6  
AF022976-11|AAC69080.1|  196|Caenorhabditis elegans Serpentine r...    28   8.1  

>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical
           protein M03F4.7a protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 225 DIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           D DSNG   LD+  + C M+ ED D ++D+ +
Sbjct: 157 DYDSNGA--LDRTEYGCFMHPEDCDHMRDVVV 186


>AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-like
           protein protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 225 DIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           D DSNG   LD+  + C M+ ED D ++D+ +
Sbjct: 157 DYDSNGA--LDRTEYGCFMHPEDCDHMRDVVV 186


>Z81496-6|CAB04070.2|  313|Caenorhabditis elegans Hypothetical
           protein F09C6.2 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -2

Query: 456 NFENILTILPI*TYLNLMVVVVLVS---KHFCLSSRLLFEPNCQMENN*GLNL---LFRQ 295
           +FEN+LTILP      L ++ +L S    HF L + L      Q +N+  LN    +  +
Sbjct: 142 SFENVLTILPFFDAQELQIIDLLTSVLASHFELITHL-----SQWKNSKSLNFPRNIDSK 196

Query: 294 HPHHTFHTRNY 262
              H FH  N+
Sbjct: 197 EVSHMFHFENF 207


>AF047656-8|AAC05109.2|  340|Caenorhabditis elegans Ligand-gated ion
           channel protein 5 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 722 FXPGSNHNPMINRVAILLPGYALVKFPLQIPLQILP 615
           F P SN N  ++RV + L  +A +   LQ+   ++P
Sbjct: 259 FSPNSNENERLSRVELCLNMFAAISMMLQLVSDMMP 294


>AF022976-11|AAC69080.1|  196|Caenorhabditis elegans Serpentine
           receptor, class w protein108 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -3

Query: 683 VAILLPGYALVKFPLQIPLQILPFFHSNDAKIHFSMMNVIILPCSLEAIGLIMANVLCNF 504
           V  +   +   + PL +   I  F+H+ND  I  + ++VII+  SL  I      + C F
Sbjct: 94  VVFMTAAFFFAEAPLGVIYMINAFYHTNDGLI-IASVDVIIVFASLLTINSTCHFIFCIF 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,781,185
Number of Sequences: 27780
Number of extensions: 318014
Number of successful extensions: 902
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)