Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1272
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    86   4e-18
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    29   0.39 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   4.8  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   4.8  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    25   6.3  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    25   6.3  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   8.4  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   8.4  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 85.8 bits (203), Expect = 4e-18
 Identities = 36/83 (43%), Positives = 57/83 (68%)
 Frame = +2

Query: 260 QFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNF 439
           Q  D ++   +P+K++ F+ N E++YI N+K+LQ  F K G+DK+V  ++L + + QDN 
Sbjct: 34  QIFDSIYQ-DIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNL 92

Query: 440 EFLQWFKKFFDANYGGAAYDAVA 508
           EF+QW K+F+D  Y G  YDA+A
Sbjct: 93  EFVQWAKRFWDQYYPGGDYDALA 115


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 293 PMKRIKFKTNLEHEYIQNFKILQAGFK 373
           P KR+K KT L+HE+     + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 554 LGRAEPPCPMGRPSRSPLRHMPHLHS 477
           L + EP  P G PS+ P+  +  LH+
Sbjct: 306 LTKLEPQPPSGSPSKKPVSELEELHT 331


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 308 KFKTNLEHEYIQNFKILQAGFK 373
           K  TNLE+EY   +KI+Q  FK
Sbjct: 748 KSSTNLENEYQTPWKIIQNPFK 769


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 213 SNFAKIEELCTGAAIASSWTCCSLAVYQ*KESNLRQIWNMNIYRTLKYYKLVL 371
           + +A++E L     +A +       ++Q   S LR I N+N+Y+   + KL++
Sbjct: 632 NTYAQLEHLSGAFTMAET---IFKTIFQIHASQLRYIDNLNVYKNWAFRKLLI 681


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 139 TFTAIFTMYQPLMKKFLTV 83
           TF A FT Y PL+ +FL V
Sbjct: 45  TFMAPFTPYMPLLGRFLIV 63


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 535 RAPWADLLDRHCVICRTSIVGVKEFLEPLQKLKIILETTL 416
           +A W  LLD+  +I  T +     FL+P    K ++  T+
Sbjct: 167 KAEWIWLLDQDAIITNTHLSLQDSFLKPENLQKTLITNTI 206


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = -2

Query: 414 TSLSMGTILSTPIFLKPACNILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQWRHLYTT 235
           + ++ G  L T +F         F I  C    L L L       N +     W+HLY T
Sbjct: 96  SEITKGNTLKTRMFKTEGVKGKCFVICFCPNHNLTLPLMSAEAICNVVET---WKHLYVT 152

Query: 234 LRSSQSLTG 208
           L+  +SL G
Sbjct: 153 LK-KESLEG 160


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 327 SKFVLNLILFIGTLPGNSMSMNWQWRHLYTTL 232
           SK + NL   IG  P N +S ++ WR  Y  L
Sbjct: 232 SKVIENLAA-IGYEPNNMLSASYDWRLSYANL 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,971
Number of Sequences: 5004
Number of extensions: 57242
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)