Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1272
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191... 89 2e-18
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 86 2e-17
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 31 0.70
03_03_0050 - 14086954-14087079,14087152-14088045 31 0.70
08_02_1241 - 25511462-25511614,25511690-25512499 30 1.6
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233... 30 1.6
03_02_0886 - 12173913-12174065,12174140-12174685 30 1.6
09_02_0412 - 8731559-8731651,8731729-8731762,8732250-8732501,873... 29 2.1
07_01_1088 + 9995442-9997736 26 3.3
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 29 3.7
05_03_0384 - 13361999-13362120,13362241-13362252,13362921-133629... 28 6.5
05_03_0383 - 13352924-13353045,13353166-13353177,13353844-133539... 28 6.5
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 28 6.5
>04_04_1332 +
32718584-32718706,32718892-32718960,32719069-32719155,
32719865-32719971,32720066-32720187,32720462-32720535,
32720833-32720946,32721100-32721213
Length = 269
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/77 (50%), Positives = 53/77 (68%)
Frame = +2
Query: 257 CQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDN 436
CQ MDM+ PG VPM ++ F E++ IQN+KILQ F K+ + K + ++KLVKGR DN
Sbjct: 49 CQLMDMVHPGVVPMHKVNFDAKTEYDMIQNYKILQDVFNKLRLSKNIEVNKLVKGRPLDN 108
Query: 437 FEFLQWFKKFFDANYGG 487
EFLQW K++ D+ GG
Sbjct: 109 LEFLQWLKRYCDSVNGG 125
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 168 LSRHDMLAWVNDCLQSNFAKIEELCTGA 251
+ R ++L+W+N LQ + AK+EE +GA
Sbjct: 19 VGRGEILSWINATLQLSLAKVEEAASGA 46
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 86.2 bits (204), Expect = 2e-17
Identities = 36/77 (46%), Positives = 51/77 (66%)
Frame = +2
Query: 257 CQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDN 436
CQ MD PG+VPM ++ F E+E IQN+K+LQ F K+ + K + ++KL KGR DN
Sbjct: 45 CQLMDAAHPGAVPMHKVNFDAKTEYEMIQNYKVLQDVFNKLKITKHIEVNKLTKGRPLDN 104
Query: 437 FEFLQWFKKFFDANYGG 487
EF+QW K++ D+ GG
Sbjct: 105 LEFMQWMKRYCDSVNGG 121
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 168 LSRHDMLAWVNDCLQSNFAKIEELCTGA 251
+ R+++LAW+N LQ +K+EE +GA
Sbjct: 15 VGRNEILAWINTTLQLGLSKVEEAASGA 42
>04_03_0659 - 18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 239 VYRCRHCQFMDMLFPGSVPMKRIKF 313
VY C HCQ D FP + P+K I+F
Sbjct: 1002 VYHCSHCQRTDHTFP-TCPLKHIEF 1025
>03_03_0050 - 14086954-14087079,14087152-14088045
Length = 339
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 239 VYRCRHCQFMDMLFPGSVPMKRIKF 313
VY C HCQ D FP + P+K I+F
Sbjct: 259 VYHCSHCQRTDHTFP-TCPLKHIEF 282
>08_02_1241 - 25511462-25511614,25511690-25512499
Length = 320
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 230 RRVVYRCRHCQFMDMLFPGSVPMKRIKF 313
++ +Y C HCQ D FP + P+K ++F
Sbjct: 228 QKELYHCSHCQRTDHTFP-TCPLKHVEF 254
>08_02_0746 +
20721421-20721649,20722912-20722971,20723318-20723377,
20723458-20723553,20723764-20723871,20724037-20724090,
20724275-20724414,20724499-20724570,20724642-20724692,
20724943-20725017,20725205-20725585,20726372-20727604,
20727679-20727831
Length = 903
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 230 RRVVYRCRHCQFMDMLFPGSVPMKRIKF 313
++ +Y C HCQ D FP + P+K ++F
Sbjct: 811 QKELYHCSHCQRTDHTFP-TCPLKHVEF 837
>03_02_0886 - 12173913-12174065,12174140-12174685
Length = 232
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 230 RRVVYRCRHCQFMDMLFPGSVPMKRIKF 313
++ +Y C HCQ D FP + P+K ++F
Sbjct: 140 QKELYHCSHCQRTDHTFP-TCPLKHVEF 166
>09_02_0412 -
8731559-8731651,8731729-8731762,8732250-8732501,
8732585-8733996
Length = 596
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = -1
Query: 283 REQHVHELAMAAPVHNS---SIFAKFDWRQSFTHASISCRDRFSD 158
RE+ V A++ P H + +K W++ F H R+ F D
Sbjct: 36 REKDVLSTALSTPEHRGRVRGVSSKMSWKEGFKHDPYKTRETFKD 80
>07_01_1088 + 9995442-9997736
Length = 764
Score = 25.8 bits (54), Expect(2) = 3.3
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -1
Query: 271 VHELAMAAPVHNSSIFAKFDWRQSFTHASISCRDRFSDVTFVEYTFTAIFTMYQPLMKKF 92
+ ELAM P +F + + R+S+ D+ VT+ TA+ Y P +K F
Sbjct: 312 IRELAMFLPFTAIGLFHQSN-RKSYN-------DKDVKVTYALLCCTAVIEFYNPFVKVF 363
Query: 91 LTVNLS 74
+V L+
Sbjct: 364 TSVTLN 369
Score = 21.4 bits (43), Expect(2) = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 430 LETTLHQFVNGYYLVHTHLFKTSL*YF 350
LET LH FV Y ++ LF + +F
Sbjct: 282 LETGLHHFVELYKQLNYTLFSSLSEFF 308
>03_05_0226 - 22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 239 VYRCRHCQFMDMLFPGSVPMKRIKF 313
VY C +CQ D FP + P+K I+F
Sbjct: 960 VYHCSYCQRTDHTFP-TCPLKHIEF 983
>05_03_0384 -
13361999-13362120,13362241-13362252,13362921-13362981,
13363049-13363202,13364653-13364788,13365020-13365290,
13365654-13365962
Length = 354
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -1
Query: 484 SIVGVKEFLEP-LQKLKIILETTLHQFVNGYYLVHTHLFKTSL 359
S++G + P + +LK+ ++ TLH+ + LVH LF+ ++
Sbjct: 151 SLIGTMSGIIPYMNQLKVFVDVTLHRMMLMKLLVHHDLFELAV 193
>05_03_0383 -
13352924-13353045,13353166-13353177,13353844-13353904,
13353972-13354125,13355576-13355711,13355943-13356138
Length = 226
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -1
Query: 484 SIVGVKEFLEP-LQKLKIILETTLHQFVNGYYLVHTHLFKTSL 359
S++G + P + +LK+ ++ TLH+ + LVH LF+ ++
Sbjct: 23 SLIGTMSGIIPYMNQLKVFVDVTLHRMMLMKLLVHHDLFELAV 65
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 457 EPLQKLKIILETTLHQFVNGYYLVHTHLFKTSL*YFKVLYIFMFQICLK-FDSF 299
E L+KLK +LET + YL L L +F + FM C FD++
Sbjct: 138 ESLEKLKKVLETYEARLSGSRYLAGDFLSFADLNHFPFTFYFMATPCASLFDAY 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,840,950
Number of Sequences: 37544
Number of extensions: 363190
Number of successful extensions: 990
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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