Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1263
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    29   0.64 
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    29   0.85 
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    27   3.4  
SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27...    26   4.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   7.9  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   7.9  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 219 QVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQ 350
           ++ I+   ++ ++  S++ E YD    EI++L      FD SV+
Sbjct: 838 KISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSVE 881


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 670 LAMLWVKVPLQNSFANFCRFSFRTM-RKSFFMMNVIILPMFTWSYRLNHGK 521
           LA    K   + SF  F RF  +T+ R+ F+ +     P   W++ + +GK
Sbjct: 394 LAEFLYKQEPKESFGRFSRFLDQTVPRRMFYHLKKDFFPFVYWNFAVRNGK 444


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -1

Query: 635 FLCKFLPFFIPNDAKIIFHDECDYFTHVHLELSA*SWQ---MYFALFEKRFPCSRSAI 471
           + CKFL  +   D +    + C YF H+       S+Q   +  A+ +  F C+  A+
Sbjct: 256 YYCKFLNSWFSGDYQQSVENLCRYFDHIMHSDEKVSYQYALLNLAMLQADFGCNEEAL 313


>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 472 SLIYNNFENILTILPICNISKFNGGS 395
           SL Y    NILT  PI   +K  GGS
Sbjct: 19  SLAYKKASNILTFPPIRTSTKHGGGS 44


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 330 PFDNSVQIIDAKKGKNVLKRVQLPPLNLDMLQIG-NIVNIFSKLLY 464
           PF ++   ID       L  V   P+N+DM  +G   V+IF   LY
Sbjct: 838 PFFSNKLFIDQDFILGFLDLVASEPINVDMTDVGTQFVHIFHASLY 883


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = -2

Query: 535 LNHGKCTLHFLKSVFRVAGAQSLIYNNFENILTILPICNISKFNGGSCTRFKTFLPFFAS 356
           L+  +CTL F KS+  +A A++++      ++ +  +C   K    + T      P+F S
Sbjct: 87  LDFNQCTLKFRKSIVELAKARNML------LMFVEVVCTNQKIIDENITDMCQHSPYFKS 140

Query: 355 II*TELSN 332
               E  N
Sbjct: 141 FPFEESKN 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,563
Number of Sequences: 5004
Number of extensions: 53816
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)