Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1260
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    57   2e-09
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    56   4e-09
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    28   1.1  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   5.7  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   7.5  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   10.0 

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 32/82 (39%), Positives = 44/82 (53%)
 Frame = +2

Query: 284 GTYSQAIXADXTLYISGILGLDRDAQMVCGGAEAQTRQALDNLXHVLEAGGAXLESXGKT 463
           G Y+QAI A+  +Y SG + +  + +++ G    QTRQ L NL  VL   G+ L    K 
Sbjct: 51  GPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQEVLTEAGSSLNKIVKV 109

Query: 464 TALLASMDDFSNFQQVYAEYFP 529
              LA MDDF+   +VY E  P
Sbjct: 110 NIFLADMDDFAAVNKVYTEVLP 131


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 28/82 (34%), Positives = 42/82 (51%)
 Frame = +2

Query: 284 GTYSQAIXADXTLYISGILGLDRDAQMVCGGAEAQTRQALDNLXHVLEAGGAXLESXGKT 463
           G Y+QA+ +   ++ SG   + +D   V G  + QTR  ++NL  VL   G+ LE   K 
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 464 TALLASMDDFSNFQQVYAEYFP 529
              L  +DDF+   +VY E  P
Sbjct: 74  NIFLTDIDDFAAMNEVYKEMLP 95


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 281 VGTYSQAIXADXTLYISGILGL 346
           +G YSQ+I A+  ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 449 SXGKTTALLASMDDFSNFQQVYAEYFP 529
           S GK   L    +DF NFQ  + E FP
Sbjct: 322 SDGKHRNLCRYYEDFFNFQTKFLELFP 348


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 10  LFENLNDFCGIIIIK*HLCRYSILLLSEHRWW---YLFV 117
           + E LN+   ++    HLC    +++  ++WW   Y FV
Sbjct: 135 VIEALNERANMLRTAPHLCTVLPIMIPVYKWWQVPYFFV 173


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 146 LHVNRSIVQMTKRYHHRC-SDSKSMEY 69
           L +  S  ++T+++HH C S SK ++Y
Sbjct: 25  LSLKLSPCKLTRKFHHACPSSSKVLKY 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,614
Number of Sequences: 5004
Number of extensions: 41240
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)