Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1260
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102...    57   8e-09
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    38   0.007
07_01_0548 - 4061829-4062956                                           28   5.8  
12_01_0112 - 860330-861946                                             27   7.7  
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732     27   7.7  

>07_03_0593 +
           19808148-19808310,19809416-19809531,19810129-19810202,
           19810286-19810335,19810498-19810592
          Length = 165

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 30/83 (36%), Positives = 47/83 (56%)
 Frame = +2

Query: 281 VGTYSQAIXADXTLYISGILGLDRDAQMVCGGAEAQTRQALDNLXHVLEAGGAXLESXGK 460
           +G YSQAI A+  +++SG+LGL+               + + N+  +L+A GA   S  K
Sbjct: 69  LGPYSQAIKANNMVFVSGVLGLN--------------PEVMKNMGEILKASGASYSSVVK 114

Query: 461 TTALLASMDDFSNFQQVYAEYFP 529
           TT +LA + DF    ++YA+YFP
Sbjct: 115 TTIMLADLQDFKKVNEIYAKYFP 137


>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
            34664499-34664647,34664784-34664879,34665406-34665476,
            34665637-34665698,34665778-34665841,34665950-34666034,
            34666129-34666255,34666381-34666454,34666539-34666599,
            34666683-34666771,34666897-34667206,34667763-34667815,
            34668299-34668370,34668648-34668914,34669015-34669047,
            34669163-34669245,34669522-34669594,34669834-34670170,
            34670302-34670633,34670816-34671135,34671261-34671612,
            34671691-34671906
          Length = 1170

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 281  VGTYSQAIXADXTLYISGILGLDRDAQMVC-GGAEAQTRQALDNLXHVLEAGGAXLES 451
            +G YSQA      LY++G LGLD     +C GG  A+   AL N   V  A G  + S
Sbjct: 870  IGPYSQATLHGEILYMAGQLGLDPPTMKLCPGGPTAELEFALRNSEAVANAFGCSIFS 927


>07_01_0548 - 4061829-4062956
          Length = 375

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 408 LSRAXRVCASAPPQTICASRSNPRIPEMYKVXSA 307
           LS A ++C++ PP     + +NPR+   Y    A
Sbjct: 21  LSAAAQLCSACPPAASQTAENNPRLQRAYVALQA 54


>12_01_0112 - 860330-861946
          Length = 538

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 344 LDRDAQMVCGGAEAQTRQALDNLXHVLEAGGAXLESXGKTTALLAS 481
           ++RD+    GGA  ++R+A  +    L+ GG  +++  KT   +A+
Sbjct: 284 VERDSAASSGGANGRSRRASLSGAGALQGGGGAMQTVAKTVDEVAA 329


>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
          Length = 1050

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 477 LAW-TTFQTFNRSMQNIFLKAWPCSN 551
           +AW TT QT  + +Q+   KAWPC+N
Sbjct: 39  IAWKTTLQT-QQPLQSWDSKAWPCNN 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,732,213
Number of Sequences: 37544
Number of extensions: 256660
Number of successful extensions: 474
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)