Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1259
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 126 8e-30
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 125 3e-29
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 113 8e-26
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 5e-07
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 30 1.3
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.0
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 7.1
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 126 bits (305), Expect = 8e-30
Identities = 55/81 (67%), Positives = 66/81 (81%)
Frame = +1
Query: 1 AIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGV 180
++ MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+
Sbjct: 168 SVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGI 226
Query: 181 EAKQPNSAIRKCVRVQLIKNG 243
EAKQPNSAIRKC RVQL+KNG
Sbjct: 227 EAKQPNSAIRKCARVQLVKNG 247
Score = 125 bits (301), Expect = 3e-29
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +1
Query: 10 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 189
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 190 QPNSAIRKCVRVQLIKNG 243
QPNSAIRKC RVQL+KNG
Sbjct: 60 QPNSAIRKCARVQLVKNG 77
Score = 117 bits (281), Expect = 7e-27
Identities = 54/65 (83%), Positives = 59/65 (90%)
Frame = +3
Query: 243 KESDXFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 422
K+ FVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 248 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 307
Query: 423 ERPRS 437
E+PRS
Sbjct: 308 EKPRS 312
Score = 113 bits (272), Expect = 8e-26
Identities = 52/63 (82%), Positives = 57/63 (90%)
Frame = +3
Query: 243 KESDXFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 422
K+ FVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 423 ERP 431
E+P
Sbjct: 138 EKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 125 bits (301), Expect = 3e-29
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +1
Query: 10 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 189
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 190 QPNSAIRKCVRVQLIKNG 243
QPNSAIRKC RVQL+KNG
Sbjct: 60 QPNSAIRKCARVQLVKNG 77
Score = 117 bits (281), Expect = 7e-27
Identities = 54/65 (83%), Positives = 59/65 (90%)
Frame = +3
Query: 243 KESDXFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 422
K+ FVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 423 ERPRS 437
E+PRS
Sbjct: 138 EKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 113 bits (272), Expect = 8e-26
Identities = 51/76 (67%), Positives = 59/76 (77%)
Frame = +1
Query: 16 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 195
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 196 NSAIRKCVRVQLIKNG 243
NSAI KC RVQL+KNG
Sbjct: 133 NSAICKCARVQLVKNG 148
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 243 KESDXFVPRDGCLNHIEENDEVLVAG 320
K+ FVP DGCLN I+EN+ V G
Sbjct: 149 KKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 300 DEVLVAGFGRKGHAVGDIPGVRFKVVK 380
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 331 LRPNPATSTSSFSSMWFRQPSRGTNXSLSFR 239
L P+ +T T +FS WFR PS+ T L R
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWTEEKLYAR 226
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 69 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 167
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -1
Query: 468 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 319
T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,064,628
Number of Sequences: 37544
Number of extensions: 324538
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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