Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1258
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    29   0.64 
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   2.6  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    26   4.5  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    26   6.0  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 219 QVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQ 350
           ++ I+   ++ ++  S++ E YD    EI++L      FD SV+
Sbjct: 838 KISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSVE 881


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +3

Query: 441 IYFQNYYISRIAL-LLHGKRFSKIAKSFAMIKPDSSK*TW*NNHIHHEK*FSHRSNEKRQ 617
           ++F NYYIS I    L  +R  +     + +K    K  W   H   E+ F  +   K Q
Sbjct: 100 VFFLNYYISTIEYHKLRKERLEEFTACTSSLKQSKQKRLW-KEHCGRERAFLRKKRTKIQ 158


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 565 ITFIMKNDFRIVRMKNGKICKGIAMGTLPK 654
           + + +KN   +V +  GK  KGI +GT  K
Sbjct: 513 LRYFVKNVENVVSLNPGKATKGINLGTFAK 542


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 264 SFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDMFKSVI*LI 443
           + L  M + +A+ + +LT           +ID      +L+  Q+PP +++ FKS+    
Sbjct: 261 NILNHMVETNAEYLMELTNKTKADVKGGTLIDYDGNVRLLEIAQVPPQHVEEFKSIKKFK 320

Query: 444 YF 449
           YF
Sbjct: 321 YF 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,412
Number of Sequences: 5004
Number of extensions: 52502
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)