Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1258
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    30   1.8  
U64847-3|AAB04872.1|  350|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    30   1.8  
U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-lik...    29   3.2  
Z81496-6|CAB04070.2|  313|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF040643-14|AAB94956.1|  299|Caenorhabditis elegans Hypothetical...    27   9.8  
AF040643-5|AAT81201.1|  299|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>U64847-3|AAB04872.1|  350|Caenorhabditis elegans Hypothetical
           protein F08F3.6 protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 672 INXWLRLW*SSHCNSFANFAVFHSNDA 592
           +N ++R W S +C +   F VFH+N++
Sbjct: 235 MNAFIRSWVSGYCPNLQRFEVFHNNNS 261


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical
           protein M03F4.7a protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 225 DIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           D DSNG   LD+  + C M+ ED D ++D+ +
Sbjct: 157 DYDSNGA--LDRTEYGCFMHPEDCDHMRDVVV 186


>AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-like
           protein protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 225 DIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           D DSNG   LD+  + C M+ ED D ++D+ +
Sbjct: 157 DYDSNGA--LDRTEYGCFMHPEDCDHMRDVVV 186


>Z81496-6|CAB04070.2|  313|Caenorhabditis elegans Hypothetical
           protein F09C6.2 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -3

Query: 456 NFENILTILPI*TYLNLMVVVVLVS---KHFCLSSRLLFEPNCQMENN*GLNL---LFRQ 295
           +FEN+LTILP      L ++ +L S    HF L + L      Q +N+  LN    +  +
Sbjct: 142 SFENVLTILPFFDAQELQIIDLLTSVLASHFELITHL-----SQWKNSKSLNFPRNIDSK 196

Query: 294 HPHHTFHTRNY 262
              H FH  N+
Sbjct: 197 EVSHMFHFENF 207


>Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical
           protein W06D12.2 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 359 VYYLNRIVKWKIIEG*IFYFVSILIIHFTQETIFIK*SYTIAIDINLFMLGNKSM 195
           V Y      W + E   F+F+S+  I F   T     S+T+A+   +F+LG  S+
Sbjct: 241 VAYFAYFENWTLFESVYFFFISMTTIGFGDFTP----SHTVAVGGIVFILGGLSV 291


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 279 FHTRNYIYQVVVYHCYRYQPVYV 211
           F+TR   + V+ +HC  Y P+Y+
Sbjct: 128 FNTRTSYFLVIEHHCGIYNPIYM 150


>AF040643-14|AAB94956.1|  299|Caenorhabditis elegans Hypothetical
           protein F14D2.1 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +3

Query: 324 YFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDMFKSVI*LIYFQNYYISRIALLLHGKRFS 503
           Y   +  V+IID     +  KRV         F   + ++  Q +Y+ +  L LH   F 
Sbjct: 113 YLSIEGHVEIIDMTGYHDFQKRVDFGSDVTRRFADTVLIVRGQRFYVLKQHLALHSPYFK 172

Query: 504 KIAK 515
            + K
Sbjct: 173 NLLK 176


>AF040643-5|AAT81201.1|  299|Caenorhabditis elegans Hypothetical
           protein F14D2.15 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +3

Query: 324 YFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDMFKSVI*LIYFQNYYISRIALLLHGKRFS 503
           Y   +  V+IID     +  KRV         F   + ++  Q +Y+ +  L LH   F 
Sbjct: 113 YLSIEGHVEIIDMTGYHDFQKRVDFGSDVTRRFADTVLIVRGQRFYVLKQHLALHSPYFK 172

Query: 504 KIAK 515
            + K
Sbjct: 173 NLLK 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,154
Number of Sequences: 27780
Number of extensions: 287225
Number of successful extensions: 767
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)