Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1252
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    93   3e-20
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    92   4e-20
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   1.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.5  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   3.3  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   4.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   4.3  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   4.3  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    25   7.5  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.5  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 46/73 (63%), Positives = 49/73 (67%)
 Frame = +1

Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGAGTVASTFDSGE 435
           TSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAP        V    +   
Sbjct: 62  TSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKR 121

Query: 436 RPWQXPVAATGVP 474
                 VAA+GVP
Sbjct: 122 YAISSAVAASGVP 134



 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 37/62 (59%), Positives = 46/62 (74%)
 Frame = +2

Query: 71  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 251 HQ 256
           HQ
Sbjct: 60  HQ 61



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +3

Query: 381 PTKPWRRWHXXXXXXXXXXXXXXXXCCYWRPTLVQARGHIIEKFPSXP 524
           PTK WR+WH                     P+L+ ARGH IE+ P  P
Sbjct: 104 PTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVP 151


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 92.3 bits (219), Expect = 4e-20
 Identities = 46/73 (63%), Positives = 49/73 (67%)
 Frame = +1

Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGAGTVASTFDSGE 435
           TSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAP        V    +   
Sbjct: 62  TSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKR 121

Query: 436 RPWQXPVAATGVP 474
                 VAA+GVP
Sbjct: 122 YAIASAVAASGVP 134



 Score = 79.0 bits (186), Expect = 4e-16
 Identities = 36/62 (58%), Positives = 46/62 (74%)
 Frame = +2

Query: 71  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 251 HQ 256
           HQ
Sbjct: 60  HQ 61



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +3

Query: 381 PTKPWRRWHXXXXXXXXXXXXXXXXCCYWRPTLVQARGHIIEKFPSXP 524
           PTK WR+WH                     P+L+ ARGH IE+ P  P
Sbjct: 104 PTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVP 151


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/65 (23%), Positives = 25/65 (38%)
 Frame = -2

Query: 467  PVAATGCCQGRSPLSKVDATVPAPPGLRGANIRPPRHMLPKAP*PDLWVPPPRTRGIRAT 288
            P +++G      P+    + +P+ P   GA   P    +P  P P +  PP     +   
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112

Query: 287  ARPVP 273
              P P
Sbjct: 1113 PVPAP 1117



 Score = 27.1 bits (57), Expect = 1.9
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
 Frame = -2

Query: 434  SPLSKVDATVPAPPGLRGANIRPPRHMLPKAP*PDLWVPP---PRTR---GIRATARPVP 273
            +PLSK  +T PA P  R   +       P  P P    PP   P T     I  +  PVP
Sbjct: 994  APLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVP 1053

Query: 272  HDSALVGDQPP 240
              S+     PP
Sbjct: 1054 KSSSGAPSAPP 1064



 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/48 (37%), Positives = 20/48 (41%)
 Frame = -2

Query: 404  PAPPGLRGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSA 261
            P P    G    PP    P  P P + VPP       +TA PVP  SA
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224



 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/60 (26%), Positives = 19/60 (31%)
 Frame = -2

Query: 440  GRSPLSKVDATVPAPPGLRGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSA 261
            G  P+       P P    G    PP    P  P P   +PP      +A   P P   A
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEA 1246


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 407  VPAPPGLRGANIRPPRHMLPKAP*PDLWVPPP 312
            V  PP +R  +  PP+   P  P P + VPPP
Sbjct: 1687 VSTPP-VRPQSAAPPQMSAPTPPPPPMSVPPP 1717


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 274  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGAGTVASTFDSG 432
            G+  A A  P V+GG   R G G +G +         +SPG     +S    G
Sbjct: 1498 GSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPG 1550


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 132 APCTVSLFSEYTDTKGRATDRLISLL 55
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 70  SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 180
           SI SP+ SVG   +  D +  S + P+ I G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = -2

Query: 431 PLSKVDATVPAPPGLRGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALVG 252
           P S    ++P PP  R A   PP    P++  P     PP     RA + P     A+ G
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPP----PRSA-PSTGRQPPPLSSSRAVSNPPAPPPAIPG 397

Query: 251 DQPP 240
              P
Sbjct: 398 RSAP 401


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 145 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 240
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 473 GTPVAATGCCQGR 435
           GTP   TGCC+ R
Sbjct: 161 GTPSTGTGCCESR 173


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 467 PVAATGCCQGRSPLSKVDATVPAPP 393
           PV +T   Q  SP+  V   VPAPP
Sbjct: 395 PVQSTQYYQPSSPVQPVQNGVPAPP 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,888
Number of Sequences: 5004
Number of extensions: 43456
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)