Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1252
(558 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 98 4e-21
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.21
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 32 0.37
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 32 0.37
SB_15139| Best HMM Match : Collagen (HMM E-Value=0.27) 30 1.1
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 1.9
SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17) 29 1.9
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 29 1.9
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 1.9
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 29 2.6
SB_24277| Best HMM Match : EGF (HMM E-Value=2.4e-06) 29 3.4
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 29 3.4
SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24) 28 4.5
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 28 4.5
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 28 5.9
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 28 5.9
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 28 5.9
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 27 7.9
SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05) 27 7.9
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 27 7.9
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 98.3 bits (234), Expect = 4e-21
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 384
TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP
Sbjct: 59 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 101
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/59 (57%), Positives = 44/59 (74%)
Frame = +2
Query: 80 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 256
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQ
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQ 58
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = +3
Query: 381 PTKPWRRWHXXXXXXXXXXXXXXXXCCYWRPTLVQARGHIIEKFPSXP 524
PTK WR+WH P L+ ARGH IEK P
Sbjct: 101 PTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEKIAEVP 148
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 379 RTYVHHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHW 257
R Y HH C H Y Y+ H H + + H YP RH+
Sbjct: 15 RCYRHHHYCCYCH--HRYCYYRHHHYCWYRHHYHYPCYRHY 53
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 31.9 bits (69), Expect = 0.37
Identities = 27/86 (31%), Positives = 31/86 (36%)
Frame = -2
Query: 497 VSSSLNERGTPVAATGCCQGRSPLSKVDATVPAPPGLRGANIRPPRHMLPKAP*PDLWVP 318
V + +NERG A T + + P PP RGA PP P P P
Sbjct: 256 VVNFVNERGGIEAVTKEIEKEYDTTASLGIQPPPPPSRGAAPPPPSRGAPPPP-PSRGSA 314
Query: 317 PPRTRGIRATARPVPHDSALVGDQPP 240
PP TA P P S PP
Sbjct: 315 PPPPPARMGTAPPPPPPSRSSQRPPP 340
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = -2
Query: 410 TVPAPPGLRGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALVGDQPP 240
T P PP ++ RPP P P + + PP G A P P VG PP
Sbjct: 324 TAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGG----AAPPPPPPPPVGGPPP 376
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 253 PTSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 372
PT +E +G ++ R PR RGGG G G G RGGR
Sbjct: 982 PTPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_15139| Best HMM Match : Collagen (HMM E-Value=0.27)
Length = 562
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/62 (35%), Positives = 25/62 (40%)
Frame = +1
Query: 232 REQGGWSPTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGAGTV 411
R GW S G VA RV GG SG G + RGGR+ + G V
Sbjct: 228 RVASGWRVASGGRVARGGCVASGGRVASGGRVASG----GRVARGGRVASGGRVASGGRV 283
Query: 412 AS 417
AS
Sbjct: 284 AS 285
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 326 WVPPPRTRGIRATARPVPHD 267
W+PP RTR R T PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.5 bits (63), Expect = 1.9
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Frame = -2
Query: 503 NNVSSSLNERGTPVAATGCCQGRS-----PLSKVDATVPAPPGLRGANIRPPRHMLPKAP 339
N + ++ G P+ G QG S P + + P PP G RPP H + P
Sbjct: 204 NEMPGAIQPGGAPLQG-GPPQGESHGQPGPPALLQQGPPGPP-FHGEP-RPPPHHDMRGP 260
Query: 338 *PDLWVPPPRTRGIRATARPVPHD 267
PD WVP P R +P D
Sbjct: 261 -PDQWVPGPEQRRDNMRGPGMPPD 283
>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
Length = 278
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 358 TCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWLVTSLL 239
TC+ HP + Y H+ H F Q H + RH+L TS L
Sbjct: 52 TCFPYHPHYHHHYRHNDH-YFHQDH----LYRHYLSTSAL 86
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 367 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 275
HH RH R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Frame = -2
Query: 515 REFFNNVSSSLNERGTPVAATGCCQGRSPLSKVDATVPAPPGLRG-ANIRPPRHMLPKAP 339
R FF+++ + TP P V+A P P + A PP P+ P
Sbjct: 62 RGFFSSLFKKKKQAPTPQTQASTAPPLVPAG-VEAPTPTPMVAQSVAPTPPPPPRAPETP 120
Query: 338 *PDLWVPPPRTR-GIRATARPVPHDSALVGDQPP 240
PPP T RA P P A G PP
Sbjct: 121 SQAPSPPPPPTSPATRAPPPPPPIAPATGGPPPP 154
Score = 29.1 bits (62), Expect = 2.6
Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -2
Query: 467 PVA-ATGCCQGRSPLSKVDATVPAPP-GLRGANIRPPRHMLPKAP*PDLWVPPPRTRGIR 294
P+A ATG P++ ATVPAP L A+ PP P P P PPP I
Sbjct: 156 PIAPATGGPPPPPPIAPA-ATVPAPAVPLAAASPPPPSGGPPPPPPPP---PPPPPPPIL 211
Query: 293 ATARPVPHDSAL 258
A P P S L
Sbjct: 212 ELAAPPPPGSVL 223
>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -3
Query: 331 TYGYHHHGHAEFGQQHVRYPMI-RHWLVTSLLAHAVGLP-RVLGHRNVN 191
+Y +HHHG E Q V I R W+ L +H P RV+G ++
Sbjct: 21 SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 376 TYVHHDTCYRRHPDRTYGYHHHGHA 302
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 352 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 260
Y +HP T+ YHH H + ++ ++P + H
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTH 442
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 352 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 260
Y +HP T+ YH H + H ++P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Frame = +1
Query: 241 GGWSPTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG--GRMFA---PRSPGG 399
GGW S WG G R +GGG R G +G G GRM R PGG
Sbjct: 6 GGWGRGSGGGWGQGPG-GGWGRGQGGGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGG 62
>SB_24277| Best HMM Match : EGF (HMM E-Value=2.4e-06)
Length = 433
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = -2
Query: 434 SPLSKVDATVPAPP-GLRGANIRPPRHMLPKAP*PDLWV---PPPRTRGIRATARPVPHD 267
+P ++ ++P PP G+ G+ PP+ ++ P P + P +GI + P PH
Sbjct: 321 NPPKRIMGSLPNPPKGIMGSTPNPPKEIMGSTPNPPKGIMGSTPNPPKGI-MDSTPHPH- 378
Query: 266 SALVGDQP 243
++G P
Sbjct: 379 KGIMGSTP 386
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 310 RGGGTHRSGQGAFGNMCRGGRMFAPRSPGGAG 405
RGGG +R G G + RGG + GG G
Sbjct: 149 RGGGGYRGGGGGYRGRGRGGGGYGGGGYGGGG 180
>SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)
Length = 1725
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 146 PFVFKAPIRPDLVNDVHVSMSKNSRQ--PYCVSKEAGHQPVPNHGVPDVLLP 295
PF F P+R +L+N++H+ ++ ++ + P+ G Q V N GV +P
Sbjct: 1264 PFYF--PLRLELINEIHLYITDDTGRTIPFLSGGFEGSQQVANPGVGLFTMP 1313
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 147 GRGLAAPCTVSLFSEYTDTKGRATDRLI 64
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 28.3 bits (60), Expect = 4.5
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -3
Query: 379 RTYVHHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 275
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 379 RTYVH-HDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 275
R Y H CYRR R + YHHH + +RY
Sbjct: 216 RCYYHCRRRCYRRR--RRHFYHHHPRRYHNHRRLRY 249
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 241 GGWSPTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGG 399
GG+ +S +G GR RGGG + G+G G G R + S GG
Sbjct: 101 GGYGGSSRGGYGGGRGGGGYGGGRGGGGYGGGRG--GGYGGGRRDYGGGSKGG 151
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 253 PTSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 372
PT + S +G ++ R PR RGGG G G G RGGR
Sbjct: 494 PTPSGS-SSGSSIVRRPRRRRGGGGGGGGGGGGGGGGRGGR 533
>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 178 PGQ*CSRFYVQELEAALLREQG-GWSPTSAESWGTGRAVARIPRVRGGGT 324
P Q C + E+ +L G G P AE G ARI +RG GT
Sbjct: 596 PAQPCKHLHSYTFESNILGNTGTGGYPGFAERGGRASYQARIQDLRGKGT 645
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 413 ATVPAPPGLRGANIRPPRHMLPKAP*PDLWVPPP 312
A PAPPG+ PP + P P +PPP
Sbjct: 178 APPPAPPGVLAPPPAPPGVLPPPPAPPGALIPPP 211
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 367 HHDTCYRRHPDRTYGYHHH 311
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)
Length = 1122
Score = 27.5 bits (58), Expect = 7.9
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Frame = +1
Query: 313 GGGTHRSGQGAFGNM--C-RGGRMFAPRS---PGGAGTVASTFDSGERPWQXPVAATGVP 474
G TH NM C + M +P + PGG G ++ST S PVA+T V
Sbjct: 1014 GSQTHMGNDLQLDNMEKCYQSSMMTSPTNTTFPGGLGIISSTMTSSGNHPTSPVASTAVI 1073
Query: 475 RSFR-LEDTLLKNSRA 519
LE T+ + +R+
Sbjct: 1074 GDIPVLETTVARPTRS 1089
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 373 YVHHDTCYRRHPDRTYGYHHHGH 305
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,223,942
Number of Sequences: 59808
Number of extensions: 392781
Number of successful extensions: 1823
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -