Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1252
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 94 5e-20
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 31 0.43
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 31 0.74
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 31 0.74
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 31 0.74
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 31 0.74
Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical p... 30 1.3
Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical p... 30 1.3
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 1.7
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 29 1.7
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 29 2.3
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 29 3.0
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 29 3.0
U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 29 3.0
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 28 4.0
U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter... 28 4.0
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 28 4.0
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 28 4.0
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 28 5.2
U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical pr... 28 5.2
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 28 5.2
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 5.2
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 5.2
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 28 5.2
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 28 5.2
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z68302-2|CAA92631.1| 630|Caenorhabditis elegans Hypothetical pr... 27 6.9
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 27 6.9
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 27 6.9
U80451-3|AAB37838.1| 71|Caenorhabditis elegans Hypothetical pr... 27 9.1
U50192-2|AAA91245.1| 71|Caenorhabditis elegans Hypothetical pr... 27 9.1
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 27 9.1
AL021572-1|CAA16516.2| 654|Caenorhabditis elegans Hypothetical ... 27 9.1
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 94.3 bits (224), Expect = 5e-20
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +1
Query: 259 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 384
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAP 103
Score = 58.0 bits (134), Expect = 4e-09
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +2
Query: 80 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 256
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQ 60
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +3
Query: 381 PTKPWRRWHXXXXXXXXXXXXXXXXCCYWRPTLVQARGHIIEKFPSXPWX*PDK 542
P K +RRWH P L+QARGH+I++ P DK
Sbjct: 103 PLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDK 156
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 31.5 bits (68), Expect = 0.43
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -2
Query: 431 PLSKVDATVPAPPGLRGAN-IRPPRHMLPKA-P*PDLWVPPPRTRGIRATARPVPHDSAL 258
P+S T PP R A+ I P ++PK+ P P PP RAT RP P + A+
Sbjct: 610 PMSVATVTRGPPPPTRPASVIAPSSSVVPKSQPRPSPTTRPPT----RATIRPTPQNKAV 665
Query: 257 VGDQPP 240
P
Sbjct: 666 TSRPAP 671
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 30.7 bits (66), Expect = 0.74
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -2
Query: 527 PRXAREFFNNVSSSLNERGTPVAATGCCQGRSPLSKVD-ATVPAPPGLRGANIRPPRHML 351
P+ E + S S G+ +A T Q L K A V APP A + PRH+
Sbjct: 378 PKTLSESIFSPSKSAAVEGS-IATTRRLQFEEKLKKSSSANVTAPPAPTSAPVPTPRHVA 436
Query: 350 PKAP 339
P AP
Sbjct: 437 PLAP 440
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 30.7 bits (66), Expect = 0.74
Identities = 24/64 (37%), Positives = 30/64 (46%)
Frame = -2
Query: 491 SSLNERGTPVAATGCCQGRSPLSKVDATVPAPPGLRGANIRPPRHMLPKAP*PDLWVPPP 312
S+L ++ P+ + S S V PAPPG R A + PPR P AP P PPP
Sbjct: 742 STLGDQPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPM-PPRGG-PGAPPPPGMRPPP 799
Query: 311 RTRG 300
G
Sbjct: 800 GAPG 803
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 30.7 bits (66), Expect = 0.74
Identities = 24/64 (37%), Positives = 30/64 (46%)
Frame = -2
Query: 491 SSLNERGTPVAATGCCQGRSPLSKVDATVPAPPGLRGANIRPPRHMLPKAP*PDLWVPPP 312
S+L ++ P+ + S S V PAPPG R A + PPR P AP P PPP
Sbjct: 742 STLGDQPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPM-PPRGG-PGAPPPPGMRPPP 799
Query: 311 RTRG 300
G
Sbjct: 800 GAPG 803
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 30.7 bits (66), Expect = 0.74
Identities = 24/64 (37%), Positives = 30/64 (46%)
Frame = -2
Query: 491 SSLNERGTPVAATGCCQGRSPLSKVDATVPAPPGLRGANIRPPRHMLPKAP*PDLWVPPP 312
S+L ++ P+ + S S V PAPPG R A + PPR P AP P PPP
Sbjct: 742 STLGDQPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPM-PPRGG-PGAPPPPGMRPPP 799
Query: 311 RTRG 300
G
Sbjct: 800 GAPG 803
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 30.7 bits (66), Expect = 0.74
Identities = 24/64 (37%), Positives = 30/64 (46%)
Frame = -2
Query: 491 SSLNERGTPVAATGCCQGRSPLSKVDATVPAPPGLRGANIRPPRHMLPKAP*PDLWVPPP 312
S+L ++ P+ + S S V PAPPG R A + PPR P AP P PPP
Sbjct: 742 STLGDQPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPM-PPRGG-PGAPPPPGMRPPP 799
Query: 311 RTRG 300
G
Sbjct: 800 GAPG 803
>Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical
protein F32D8.7b protein.
Length = 380
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 316 GGTHRSGQGAFGNM-CRGGRMFAPRSPGGAGTVASTFDSGERPWQXPVAATGVP 474
GG +++GQGA G + G P G G + ++G P P A G P
Sbjct: 267 GGNNQAGQGALGALGMFTGSGLGPTGQGPLGNFSPNPNAGAAPNPGPAAGAGGP 320
>Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical
protein F32D8.7a protein.
Length = 378
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 316 GGTHRSGQGAFGNM-CRGGRMFAPRSPGGAGTVASTFDSGERPWQXPVAATGVP 474
GG +++GQGA G + G P G G + ++G P P A G P
Sbjct: 265 GGNNQAGQGALGALGMFTGSGLGPTGQGPLGNFSPNPNAGAAPNPGPAAGAGGP 318
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 398 PPGLRGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 270
P G+ GA PP P AP P +++PPP G R P+ H
Sbjct: 152 PRGMPGAY--PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 398 PPGLRGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 270
P G+ GA PP P AP P +++PPP G R P+ H
Sbjct: 152 PRGMPGAY--PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 310 RGG--GTHRSGQGAFGNMCRGGRMFAPRSPGGAG 405
RGG G G+G F RGG F+PR G G
Sbjct: 123 RGGDRGVANRGRGDFSGGSRGGNKFSPRGGGRGG 156
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +1
Query: 301 PRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGG 399
PR RGGG R G+G GG F PR GG
Sbjct: 6 PRGRGGGGFRGGRG-------GGSGFTPRGGGG 31
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +1
Query: 301 PRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGAGTVASTFDSGERPWQ 447
PR RGGG +G F RGG +P G G D G PW+
Sbjct: 79 PRGRGGGFRGGDRGGFRGGDRGG---SPWRGGDRGNFRGG-DRGGSPWR 123
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 437 RSPLSKVDATVPAPPGLRGANIRPPRHMLP--KAP*PDLWVPPPRTRGIRATARPVP 273
R+P S + P PP RG+ P P +AP P PP TR AT RP P
Sbjct: 283 RTPPSS-GTSAPQPPP-RGSTAAPGTRAPPATRAP-PATRAPPATTRAPPATTRPAP 336
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 28.7 bits (61), Expect = 3.0
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = +1
Query: 217 EAALLREQGGWSPTSAESWGTGRAVARIPRVRGG----GTHRSGQGAFGNMCRGGR--MF 378
EA + + G ++PTS+ G G RGG G R G+G +G RGGR
Sbjct: 654 EAKVAKGFGQFAPTSSAYGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYG 713
Query: 379 APRSPGGAG 405
R GG G
Sbjct: 714 GDRGRGGYG 722
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 28.7 bits (61), Expect = 3.0
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = +1
Query: 217 EAALLREQGGWSPTSAESWGTGRAVARIPRVRGG----GTHRSGQGAFGNMCRGGR--MF 378
EA + + G ++PTS+ G G RGG G R G+G +G RGGR
Sbjct: 695 EAKVAKGFGQFAPTSSAYGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYG 754
Query: 379 APRSPGGAG 405
R GG G
Sbjct: 755 GDRGRGGYG 763
>U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical
protein C18H9.3 protein.
Length = 918
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 247 WSPTSAESWGT-GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGA 402
W+P S+ + GT R PR GGG+ GAF GGR+ GGA
Sbjct: 101 WAPKSSWNKGTPDRGTGTTPR--GGGSVGRASGAFFAGRGGGRIGGENGFGGA 151
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 28.7 bits (61), Expect = 3.0
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = +1
Query: 217 EAALLREQGGWSPTSAESWGTGRAVARIPRVRGG----GTHRSGQGAFGNMCRGGR--MF 378
EA + + G ++PTS+ G G RGG G R G+G +G RGGR
Sbjct: 654 EAKVAKGFGQFAPTSSAYGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYG 713
Query: 379 APRSPGGAG 405
R GG G
Sbjct: 714 GDRGRGGYG 722
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical protein
F58G11.2 protein.
Length = 960
Score = 28.3 bits (60), Expect = 4.0
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Frame = +1
Query: 235 EQGGWSPTSAESWGTGRAVARIPRVRGGGTHRS---GQGAFGNMCRGGRMFAPRSPGGAG 405
++GG+ GTGR R V GGG G G FG GG GG G
Sbjct: 807 QRGGYGGRGGGFGGTGRG--RGGGVFGGGGRGGDFGGSGNFGGSGGGGSFGGSGGGGGFG 864
Query: 406 TVASTFDSGERPWQXPVAATG 468
V + G R P ++ G
Sbjct: 865 GVKPSGFGGSRNNAEPTSSGG 885
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 28.3 bits (60), Expect = 4.0
Identities = 24/71 (33%), Positives = 29/71 (40%)
Frame = +1
Query: 274 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGAGTVASTFDSGERPWQXP 453
G R + + RGGG R G FG RGG + S GG G FD +R
Sbjct: 62 GGERVILDYSKPRGGGGDRGG---FGGGGRGGARVSSYSGGGGGG-RDRFDRYDRGPPRR 117
Query: 454 VAATGVPRSFR 486
+ G P S R
Sbjct: 118 ESRYGRPYSTR 128
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 28.3 bits (60), Expect = 4.0
Identities = 24/71 (33%), Positives = 29/71 (40%)
Frame = +1
Query: 274 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGAGTVASTFDSGERPWQXP 453
G R + + RGGG R G FG RGG + S GG G FD +R
Sbjct: 62 GGERVILDYSKPRGGGGDRGG---FGGGGRGGARVSSYSGGGGGG-RDRFDRYDRGPPRR 117
Query: 454 VAATGVPRSFR 486
+ G P S R
Sbjct: 118 ESRYGRPYSTR 128
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 28.3 bits (60), Expect = 4.0
Identities = 24/71 (33%), Positives = 29/71 (40%)
Frame = +1
Query: 274 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGAGTVASTFDSGERPWQXP 453
G R + + RGGG R G FG RGG + S GG G FD +R
Sbjct: 62 GGERVILDYSKPRGGGGDRGG---FGGGGRGGARVSSYSGGGGGG-RDRFDRYDRGPPRR 117
Query: 454 VAATGVPRSFR 486
+ G P S R
Sbjct: 118 ESRYGRPYSTR 128
>U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 5 protein.
Length = 284
Score = 28.3 bits (60), Expect = 4.0
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Frame = +1
Query: 205 VQELEAALLREQGGWSPTSAESWGT------GRAVARIPRVRG-GGTHR--SGQGAFGNM 357
+ ++ ++ E GG+ S ++WGT G + VRG G H+ + Q + G
Sbjct: 31 INDMYDDVMGELGGFRDISDDTWGTLLDVRHGAGESAEQYVRGIFGRHKRSNSQCSCGLP 90
Query: 358 CRGGRMFAPRSPGGAGTVASTFDSGER-PWQXPVAATGVPRSFRLE 492
+G AP +PG G T G+ P P +P F E
Sbjct: 91 SQGCPAGAPGNPGAPGEPGGTGPDGKNGPTGLPGLNIPIPNDFPKE 136
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +3
Query: 252 TNQC--RIMGYRTCCCPNSAC 308
TN+C + G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +3
Query: 252 TNQC--RIMGYRTCCCPNSAC 308
TN+C + G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 316 GGTHRSGQGAFGNMCRGGRMFAPRSPG-GAGTVASTFDSGER 438
GG + G G FG GG + S G G T S F SGE+
Sbjct: 75 GGGNTCGSG-FGGGSTGGSPYGGASSGFGGSTATSGFGSGEK 115
>U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical
protein F53A9.7 protein.
Length = 85
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 391 GFVGRTYVHHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHW 257
G++ T VH D + H D HHH + G+ H + ++H+
Sbjct: 29 GYMPPTVVHTDGGHHGHVDT----HHHEESHHGEHHGGHHGVQHY 69
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 316 GGTHRSGQGAFGNMCRGGRMFAPRSPG-GAGTVASTFDSGER 438
GG + G G FG GG + S G G T S F SGE+
Sbjct: 75 GGGNTCGSG-FGGGSTGGSPYGGASSGFGGSTATSGFGSGEK 115
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +1
Query: 241 GGWSPTSAESWGTGRAVARIPRVRGGGTH--RSGQGAFGN---MCRGGRMFAPRS--PGG 399
G P + + + IP+V G G + G+G +G+ M RGGR+ P PGG
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRPAGTLPGG 2187
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +1
Query: 241 GGWSPTSAESWGTGRAVARIPRVRGGGTH--RSGQGAFGN---MCRGGRMFAPRS--PGG 399
G P + + + IP+V G G + G+G +G+ M RGGR+ P PGG
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRPAGTLPGG 2187
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/70 (30%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Frame = +1
Query: 241 GGWSPTSAESWGT--GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGAGTVA 414
GGW WG GR GGG + G G G GG R GG G
Sbjct: 47 GGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWGGNGG-GRGDWGGNGGGGRGGGGRGDWG 105
Query: 415 STFDSGERPW 444
+ G W
Sbjct: 106 GNNNGGGGNW 115
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 316 GGTHRSGQGAFGNMCRGGRMFAPRSPG-GAGTVASTFDSGER 438
GG + G G FG GG + S G G T S F SGE+
Sbjct: 75 GGGNTCGSG-FGGGSTGGSPYGGASSGFGGSTATSGFGSGEK 115
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 128 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 27
P S +S N PT+K+ L I+ YF PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical protein
F48F5.1 protein.
Length = 1291
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 388 FVGRTYVHHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWL 254
F+G Y+ + HPD T G + EF + ++ P +W+
Sbjct: 1170 FIGSEYLAREI--EHHPDTTLGKNMENMREFRSKGIQTPQQLYWM 1212
>Z68302-2|CAA92631.1| 630|Caenorhabditis elegans Hypothetical
protein ZK792.5 protein.
Length = 630
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 313 GGGTHRSGQGAFGNMCRGGRMFAPRSPGG 399
GGG R G G F RGGR R GG
Sbjct: 58 GGGRGRGGDGGFRRNDRGGRGGGGRGFGG 86
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 367 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 284
HHD +++H + + HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 310 RGG-GTHRSGQGAFGNMCRGGRMFAPRSPGGAGTVASTFDSGER 438
RGG G+ R G+G FG GG F GG G F G+R
Sbjct: 164 RGGRGSDRGGRGGFGR--GGGGGFRGGDRGGFGGGRGGFRGGDR 205
>U80451-3|AAB37838.1| 71|Caenorhabditis elegans Hypothetical
protein F11G11.8 protein.
Length = 71
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 313 GGGTHRSGQGAFGNMCRGGRMFAPRS 390
GGG + QG+ GN GG++F R+
Sbjct: 38 GGGQQQQNQGSGGNTNPGGQVFKART 63
>U50192-2|AAA91245.1| 71|Caenorhabditis elegans Hypothetical
protein T23B7.1 protein.
Length = 71
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 313 GGGTHRSGQGAFGNMCRGGRMFAPRS 390
GGG + QG+ GN GG++F R+
Sbjct: 38 GGGQQQQNQGSGGNTNPGGQVFKART 63
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/58 (20%), Positives = 25/58 (43%)
Frame = +2
Query: 65 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 238
MS++V P +S V + + F++ P ++ D H+ + + CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
>AL021572-1|CAA16516.2| 654|Caenorhabditis elegans Hypothetical
protein W06H3.1 protein.
Length = 654
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 286 AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGA 402
A+++ +VRG T + F +CR GR A + GGA
Sbjct: 516 AMSKTSKVRGEYTEQDLNTRFNKVCRIGRRVAYVNEGGA 554
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,479
Number of Sequences: 27780
Number of extensions: 282248
Number of successful extensions: 1216
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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