Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1251
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 80 1e-16
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 79 2e-16
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 1.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 1.7
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 2.3
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 2.3
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 3.9
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 24 6.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 6.9
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 24 9.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 24 9.1
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 24 9.1
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 24 9.1
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 24 9.1
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 79.8 bits (188), Expect = 1e-16
Identities = 37/62 (59%), Positives = 46/62 (74%)
Frame = +2
Query: 71 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 251 HQ 256
HQ
Sbjct: 60 HQ 61
Score = 78.6 bits (185), Expect = 3e-16
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 369
TSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR G
Sbjct: 62 TSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSG 99
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 79.0 bits (186), Expect = 2e-16
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +2
Query: 71 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 251 HQ 256
HQ
Sbjct: 60 HQ 61
Score = 78.6 bits (185), Expect = 3e-16
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 369
TSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR G
Sbjct: 62 TSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSG 99
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 1.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 132 APCTVSLFSEYTDTKGRATDRLISLL 55
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 1.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 274 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGPY 375
G+ A A P V+GG R G G +G + PY
Sbjct: 1498 GSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPY 1531
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 2.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 70 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 180
SI SP+ SVG + D + S + P+ I G + P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 2.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 145 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 240
PV +QG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 3.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -1
Query: 379 EHTVHHDTCYRRHPDRTYGYHHHGH 305
+ T HH Y H +G+ HH H
Sbjct: 13 DSTHHHTHDYDHHNHDHHGHDHHSH 37
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 121 GAGCSQAPPVRIQGAHTSGPGQ*CSRFYVQELE 219
G G S PP I+G S + RF+ + LE
Sbjct: 131 GMGNSSRPPFDIKGQTASEKVEETERFFTESLE 163
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 368 PPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSA 261
PP P P P + VPP +TA PVP SA
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 23.8 bits (49), Expect = 9.1
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 166 HTSGPGQ*CSRFYVQELEAALLREQGGWSPTSAESWGTGRAVARIPRVRG 315
HT G GQ V EL+ + P +AE W GR + R +RG
Sbjct: 651 HTDGRGQLSLLNIVVELKK--VSNHPYLFPGAAEKWMMGRKMTREDTLRG 698
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 368 PPRHMLPKAP*PDLWVPPP 312
PP+ P P P + VPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 189 SLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTKGRATDRL 67
SL+ S R+GAL++ + + C + T +G + DR+
Sbjct: 325 SLSLSARIGALHSLNKKQVSLCDRFMLGGSTSLRGFSEDRI 365
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 59 SEMSLSVARPLVSVYSE 109
SEMSL++A P+ + Y+E
Sbjct: 96 SEMSLTIALPISAAYTE 112
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 23.8 bits (49), Expect = 9.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 352 YRRHPDRTYGYHH 314
YRR +TYGY+H
Sbjct: 411 YRREITQTYGYYH 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,556,967
Number of Sequences: 5004
Number of extensions: 30417
Number of successful extensions: 99
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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