Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1250
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   119   4e-28
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   115   5e-27
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    29   0.54 
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    28   0.94 
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.2  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   2.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   3.8  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   5.0  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    26   5.0  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   5.0  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   6.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   6.6  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   6.6  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  119 bits (286), Expect = 4e-28
 Identities = 56/84 (66%), Positives = 69/84 (82%), Gaps = 2/84 (2%)
 Frame = +1

Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGL 435
           LLSVAYKN++GARR+SWR+ISSIEQK E  G+ R+  + KEYR K+E EL +IC+DVL +
Sbjct: 45  LLSVAYKNIIGARRASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSV 104

Query: 436 LDKHLIPKASNPESKVFYLKMKGD 507
           L+KHLIP A+  ESKVFY KMKGD
Sbjct: 105 LEKHLIPAATTGESKVFYYKMKGD 128



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 21/41 (51%), Positives = 27/41 (65%)
 Frame = +2

Query: 131 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNE 253
           MS  +E  V  AKLAEQAERY++M   MK+V  +  +LS E
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVE 41


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  115 bits (277), Expect = 5e-27
 Identities = 54/84 (64%), Positives = 69/84 (82%), Gaps = 2/84 (2%)
 Frame = +1

Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGL 435
           LLSVAYKNV+GARR+SWR++SSIEQK E  G+  + ++ KEYR K+E+EL  IC D+L +
Sbjct: 46  LLSVAYKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTV 105

Query: 436 LDKHLIPKASNPESKVFYLKMKGD 507
           L+KHLIP A++ ESKVFY KMKGD
Sbjct: 106 LEKHLIPNAASAESKVFYYKMKGD 129



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = +2

Query: 134 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNE 253
           +  +E+ V  AKLAEQAERY+ M   MK V  T  EL+ E
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVE 42



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 507 FYRYLAEVATGETRHSVVEDSQE 575
           +YRYLAE A GE R    + S E
Sbjct: 130 YYRYLAEFAVGEKRQHSADQSLE 152


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +2

Query: 146 EELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEGGTSFQL 274
           ++LV R K  E  ERY  +   ++++ E  +++ +EGG+  QL
Sbjct: 40  QKLVTREKEQETLERYAVILRDVEKLIEAHIQIVSEGGSYSQL 82


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +3

Query: 24  FSAREKLILC-----LNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLS 188
           FS +E  ILC     L+L+V  +    ++  S+ + F +PR     K   N   WPN+ S
Sbjct: 39  FSDKENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETS 98

Query: 189 DM 194
            +
Sbjct: 99  HL 100


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
 Frame = +1

Query: 313 RVISSIEQKTEGSERKQQMAKEYRVKVEKE-LREICYDVLGL--LDKHL---IPKASNPE 474
           +V+SS  +  E S  +  +    R   E E L E+  +V  L  +D+     +P+  NP 
Sbjct: 263 KVLSSSSEDDESSSPEDLLKPIIRSTEEMENLNELEQEVQDLDPIDEGFEEKVPRFRNPS 322

Query: 475 SKVFYLK---MKGDSTGTLQKWPQEKPDILL 558
            K FY K   ++  S   L+    EK D L+
Sbjct: 323 KKAFYEKLHSLRNRSYSKLESLTSEKSDTLI 353


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 280 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 396
           KN+     S+ R +SS + K   +E +  M  +Y  K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 337  KTEGSERKQQMAKEYRVKVEKELREI-CYDVLGLLDKHLIPKASNPESKVFYLKMKGDST 513
            K +G  RK ++    R   E  LR   C+  + +L    +     PES+ +YL++K    
Sbjct: 1476 KLQGRARKTELHGFIRANAEMVLRSPECF--IKILKDCCVLGHFTPESEHYYLELKESLP 1533

Query: 514  GTLQ 525
            G LQ
Sbjct: 1534 GVLQ 1537


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 334 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 459
           +K    +    + KEY  K +++LR+   D+  LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 483 VLPQNERRFYRYL-AEVATGETRHSVVEDSQESIPRCFLKSARRK 614
           +L   E   Y YL   V   +T +  + D QES+ RC+ +S   K
Sbjct: 135 LLTPEEGEIYEYLEGRVLPLQTVYMQMVDIQESMDRCYFESEVNK 179


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 268 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 402
           S +Y  + G   S W+ I  ++ K+ G +R    ++ Y    +KE
Sbjct: 61  SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 36  EKLILCLNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNW 173
           EKL+ C       HF    +G+ +  L    RC +T    CNVP W
Sbjct: 683 EKLVACTT-----HFY---EGVRKSALSSLWRCATTYYKVCNVPQW 720


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 268 SVAYKNVVGARRSSWRVISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 408
           SV+ +    +R  S+   S  E + E SE   R+Q++ +E R + EK+LR
Sbjct: 358 SVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 78  FSPSDK-GISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 200
           FSP +K  + +L LFH  + PS+++    V N  +  SD +T
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSN--SNSSDTST 201


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 352 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 474
           E++Q  A +YR+KVE+   +I   V  +  L+  L  + SNPE
Sbjct: 85  EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,429
Number of Sequences: 5004
Number of extensions: 47902
Number of successful extensions: 154
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)