Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1250
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 116 2e-26
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 113 8e-26
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 112 2e-25
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 111 4e-25
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 109 2e-24
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 103 1e-22
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 83 2e-16
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 66 2e-11
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 31 0.55
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 31 0.55
11_08_0071 + 28153043-28153555 31 0.73
02_05_0396 - 28600855-28601475,28601579-28601761,28601970-286021... 29 2.2
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43... 28 6.8
03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228 28 6.8
02_05_0552 - 29911280-29912541,29912633-29912762 28 6.8
04_01_0275 + 3648866-3649951 27 9.0
02_05_0797 - 31805956-31806902,31806992-31807505 27 9.0
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 116 bits (279), Expect = 2e-26
Identities = 56/84 (66%), Positives = 68/84 (80%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGL 435
LLSVAYKNV+GARR+SWR+ISSIEQK E G+E + + KEYR K+E EL +IC +L L
Sbjct: 269 LLSVAYKNVIGARRASWRIISSIEQKEESRGNEDRCTLIKEYRGKIETELSKICDGILKL 328
Query: 436 LDKHLIPKASNPESKVFYLKMKGD 507
LD HL+P ++ PESKVFYLKMKGD
Sbjct: 329 LDSHLVPSSTAPESKVFYLKMKGD 352
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 122 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET 232
S + +EE V AKLAEQAERY++M M++V +T
Sbjct: 220 SQPAELSREENVYMAKLAEQAERYEEMVEFMEKVAKT 256
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 113 bits (273), Expect = 8e-26
Identities = 54/84 (64%), Positives = 68/84 (80%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGL 435
LLSVAYKNV+GARR+SWR+ISSIEQK E G+E + + K+YR K+E EL +IC +L L
Sbjct: 51 LLSVAYKNVIGARRASWRIISSIEQKEESRGNEDRVTLIKDYRGKIETELTKICDGILKL 110
Query: 436 LDKHLIPKASNPESKVFYLKMKGD 507
L+ HL+P ++ PESKVFYLKMKGD
Sbjct: 111 LESHLVPSSTAPESKVFYLKMKGD 134
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +2
Query: 122 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET 232
S+ + +EE V AKLAEQAERY++M M++V +T
Sbjct: 2 SAQAELSREENVYMAKLAEQAERYEEMVEFMEKVAKT 38
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 112 bits (270), Expect = 2e-25
Identities = 54/84 (64%), Positives = 66/84 (78%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTEG--SERKQQMAKEYRVKVEKELREICYDVLGL 435
LLSVAYKNV+GARR+SWR++SSIEQK EG +E + KEYR K+E EL +IC +L L
Sbjct: 45 LLSVAYKNVIGARRASWRIVSSIEQKEEGRGNEEHVTLIKEYRGKIEAELSKICDGILKL 104
Query: 436 LDKHLIPKASNPESKVFYLKMKGD 507
LD HL+P ++ ESKVFYLKMKGD
Sbjct: 105 LDSHLVPSSTAAESKVFYLKMKGD 128
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +2
Query: 137 VDKEELVQRAKLAEQAERYDDMAAAMKEVTET 232
+ +EE V AKLAEQAERY++M M++V +T
Sbjct: 1 MSREENVYMAKLAEQAERYEEMVEYMEKVAKT 32
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 111 bits (267), Expect = 4e-25
Identities = 55/84 (65%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGL 435
LLSVAYKNV+GARR+SWR+ISSIEQK E G+E KEYR ++E EL +IC +L L
Sbjct: 50 LLSVAYKNVIGARRASWRIISSIEQKEESRGNEAYVASIKEYRSRIETELSKICDGILKL 109
Query: 436 LDKHLIPKASNPESKVFYLKMKGD 507
LD HL+P A+ ESKVFYLKMKGD
Sbjct: 110 LDSHLVPSATAAESKVFYLKMKGD 133
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2
Query: 125 STMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET 232
S +EE V AKLAEQAERY++M M++V +T
Sbjct: 2 SPAEASREENVYMAKLAEQAERYEEMVEFMEKVAKT 37
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 109 bits (261), Expect = 2e-24
Identities = 54/84 (64%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMA--KEYRVKVEKELREICYDVLGL 435
LLSVAYKNV+GARR+SWR+ISSIEQK EG A + YR K+E EL IC +L L
Sbjct: 28 LLSVAYKNVIGARRASWRIISSIEQKEEGRGNDAHAATIRSYRGKIEAELARICDGILAL 87
Query: 436 LDKHLIPKASNPESKVFYLKMKGD 507
LD HL+P A ESKVFYLKMKGD
Sbjct: 88 LDSHLVPSAGAAESKVFYLKMKGD 111
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 103 bits (246), Expect = 1e-22
Identities = 50/84 (59%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTEG--SERKQQMAKEYRVKVEKELREICYDVLGL 435
LLSVAYKNV+GARR+SWR++SSIEQK EG + A+ YR +VE EL IC +L L
Sbjct: 55 LLSVAYKNVIGARRASWRIVSSIEQKEEGRGAAGHAAAARSYRARVEAELSNICAGILRL 114
Query: 436 LDKHLIPKASNPESKVFYLKMKGD 507
LD+ L+P A+ ++KVFYLKMKGD
Sbjct: 115 LDERLVPAAAAVDAKVFYLKMKGD 138
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 143 KEELVQRAKLAEQAERYDDMAAAMKEV 223
+EE+V AKLAEQAERY++M M++V
Sbjct: 10 REEMVYMAKLAEQAERYEEMVEFMEKV 36
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/82 (43%), Positives = 54/82 (65%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLD 441
L SV +K +GARR+SWR++ S+EQK ++ Y+ KVE ELR +C +VL ++
Sbjct: 44 LFSVGFKKTIGARRASWRILESLEQKVTAGDQPGVTINGYKKKVEDELRAVCNEVLSIIA 103
Query: 442 KHLIPKASNPESKVFYLKMKGD 507
H +P A++ E+ VF+ KMKGD
Sbjct: 104 IHCLPLANSGENVVFFYKMKGD 125
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +2
Query: 140 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNE 253
++E++V+ AKLAEQAERYDDM MK + V++S E
Sbjct: 3 EREKVVRLAKLAEQAERYDDMVEFMKTLARMDVDMSAE 40
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/63 (50%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQK--TEGSERKQQMAKEYRVKVEKELREICYDVLGL 435
LLSV YKN++GA+R++ R+I SIE K T+G E + EYR KVE E+ +IC DV+ +
Sbjct: 22 LLSVGYKNLIGAKRAAMRIIGSIELKEETKGKESHVRQTAEYRRKVEAEMDKICCDVINI 81
Query: 436 LDK 444
+DK
Sbjct: 82 IDK 84
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 31.5 bits (68), Expect = 0.55
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +1
Query: 304 SSWRVISSIEQKTEGSERKQQMAKEYRVKVE--KELREICYD-VLGLLDKHLIPKASNPE 474
+ WR+++ + + E YRV ++ K+ I Y +GL+ ++ P
Sbjct: 111 AKWRILNRLHDRNE--------TLYYRVLIDNIKDFAPIIYTPTVGLVCENYSGLFRRPR 162
Query: 475 SKVFYLKMKGDSTGTLQKWPQEKPDILL 558
F K KG+ + WP EK D+++
Sbjct: 163 GMYFSAKDKGEMMSMIYNWPAEKVDMIV 190
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +1
Query: 400 ELREICYDVLGLLDKHLIPKASNPES-----KVFYLKMKGDSTGTLQ 525
+LRE+ YD+ LD+ L+ A+ P S K+ K+KG + G ++
Sbjct: 71 DLRELSYDMEDSLDRFLVKSAAEPGSCKKLFKILLTKIKGSTNGIVK 117
>11_08_0071 + 28153043-28153555
Length = 170
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 127 GRWKRTNSLMPLSEGEKCI*TSKFKHNISFSLALNDILVLT 5
G W R N+ PL + + H++S S++L +ILV T
Sbjct: 130 GTWLRANTSCPLCRADTTPSSGDLHHHLSISVSLEEILVRT 170
>02_05_0396 -
28600855-28601475,28601579-28601761,28601970-28602129,
28602217-28602795,28603044-28603618,28604161-28604176,
28605566-28605663,28605774-28606286
Length = 914
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -2
Query: 551 MSGFSCGHFCKVPVESPFILR-*NTLLSGLLALGI 450
+S F GH+ K+P +S F+++ T+++G + LG+
Sbjct: 688 LSDFKLGHYMKIPPKSMFLVQFIGTIVAGTVNLGV 722
>06_01_0047 -
429838-429960,430413-430508,430589-430596,431088-431141,
431226-431274,431368-431466,431560-431639,431926-431989,
432082-432255,432342-432965,433046-433189,433262-433372,
433442-433498,433664-433798
Length = 605
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 265 GGSSLVAKFDAGFRHFLH-RGRHVVISLSLFGQ 170
GGS++ +KFD+G + LH G+ + S+ FG+
Sbjct: 243 GGSTIHSKFDSGKQKILHIFGKTSIPSVKFFGE 275
>03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228
Length = 628
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 140 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEGGTSFQLLIRMS 289
D ++++ A+L EQA D A +++EV + GT FQL S
Sbjct: 140 DMKDVLLHARLVEQAAGEDQPAVSIEEVPGSNGRGGANEGTVFQLTFACS 189
>02_05_0552 - 29911280-29912541,29912633-29912762
Length = 463
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 68 SNTFFPFRQGHQ*ISPLPSSTMSVDKEELVQRAKL-AEQAERYDDMAAAM 214
S T H SP+PSS +EEL++R +L AE +R M AA+
Sbjct: 50 SGTTVALNHRHGPCSPVPSSKKRPTEEELLKRDQLRAEHIQRKFAMNAAV 99
>04_01_0275 + 3648866-3649951
Length = 361
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 301 RSSWRVISSIEQKTEGSERKQQMAKEYR--VKVEKELREICYDVL 429
R SW +ISS+ +K E + Y ++V ++R++ +D +
Sbjct: 19 RRSWMLISSLGKKLASEEEWMEYEYHYSRGIRVSPDIRKVLFDCI 63
>02_05_0797 - 31805956-31806902,31806992-31807505
Length = 486
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 137 VDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEGGTS 265
V +EE+ + + A E+ DM A E V + EGGTS
Sbjct: 425 VKREEVARLVQEAMDGEKSKDMRAKAMAWKEKAVAATEEGGTS 467
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,180,935
Number of Sequences: 37544
Number of extensions: 316383
Number of successful extensions: 1005
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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