Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1250
(618 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.) 121 5e-28
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 2e-21
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44) 91 7e-19
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0) 88 5e-18
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_43369| Best HMM Match : S-antigen (HMM E-Value=2.4) 28 5.3
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 28 5.3
SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81) 27 9.2
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 121 bits (291), Expect = 5e-28
Identities = 59/82 (71%), Positives = 66/82 (80%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLD 441
LLSVAYKNVVGA+RSSWRVISSIEQK EGSERK+Q + YR +E EL E+C VL LL+
Sbjct: 22 LLSVAYKNVVGAKRSSWRVISSIEQKLEGSERKKQNTETYRQTIENELNEVCETVLKLLE 81
Query: 442 KHLIPKASNPESKVFYLKMKGD 507
LIP A + ESKVFYLKMKGD
Sbjct: 82 SKLIPNAQSTESKVFYLKMKGD 103
>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 99.5 bits (237), Expect = 2e-21
Identities = 48/82 (58%), Positives = 65/82 (79%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLD 441
LLSV+YKN+VG RRSSWRVISSIE+KT S + K+Y+ +EKEL+++C +VLG+L+
Sbjct: 124 LLSVSYKNIVGQRRSSWRVISSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEVLGILE 182
Query: 442 KHLIPKASNPESKVFYLKMKGD 507
+ LIP A + E+KVFY K+KGD
Sbjct: 183 R-LIPGAEDEENKVFYFKLKGD 203
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +2
Query: 131 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNE 253
M V +E L+ AKL+EQ +RYD+MA MKEV+E +LS E
Sbjct: 80 MMVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKE 120
>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
Length = 251
Score = 91.1 bits (216), Expect = 7e-19
Identities = 46/82 (56%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTE--GSE-RKQQMAKEYRVKVEKELREICYDVLG 432
LLSVAYKNV+GARR+SWR+I+SIEQK E G + K +M + YR +E+EL+ IC ++L
Sbjct: 44 LLSVAYKNVIGARRASWRIITSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILS 103
Query: 433 LLDKHLIPKASNPESKVFYLKM 498
LLD LI + + ESKVFY K+
Sbjct: 104 LLDDSLIKNSQSEESKVFYNKI 125
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/38 (71%), Positives = 29/38 (76%)
Frame = +2
Query: 140 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNE 253
DKEE V AKLAEQAERYDDM +MKEV + G ELS E
Sbjct: 3 DKEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELSTE 40
>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
Length = 248
Score = 88.2 bits (209), Expect = 5e-18
Identities = 47/85 (55%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLD 441
LLSVAYKNVVGARRSSWRVISS+EQK E + K+YR + EL C +VL +L+
Sbjct: 51 LLSVAYKNVVGARRSSWRVISSMEQK--APEEMAALTKKYREDITNELNGKCAEVLDILE 108
Query: 442 KHLIPKAS---NPESKVFYLKMKGD 507
+L+ N E+KVFYLKM+GD
Sbjct: 109 NYLLKDGQDDINTEAKVFYLKMRGD 133
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = +2
Query: 119 PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNE 253
P+ +EEL+ AK+AEQAERYDDM AM VT+ G L++E
Sbjct: 3 PNFVSKCSREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLNDE 47
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 507 FYRYLAEVATGETRHSVVEDSQES 578
++RYL EVA G++R +E S+E+
Sbjct: 134 YHRYLVEVAEGDSRKENIEKSREA 157
>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +1
Query: 262 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAK--EYRVKVEKELREICYDVL 429
LLSV YKNVVG++R +WR + ++ R Q+ +Y+ K+E EL+ +C ++L
Sbjct: 230 LLSVGYKNVVGSKRFAWRHLHHDALQSGRYIRDSQLKGIIKYKEKIEMELKTLCREIL 287
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 131 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNE 253
M + ELVQ AKLAEQ ER++D+ MK+ E L+ E
Sbjct: 186 MQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLNKE 226
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 301 RSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASN 468
+ W ++S E+ +ER++Q E +VK E++ R+ ++ + HL K SN
Sbjct: 338 KHQWNLLSEDEKNKIKAERRKQKRLELKVKREEKERKRLEELKRVSFAHLGMKLSN 393
>SB_43369| Best HMM Match : S-antigen (HMM E-Value=2.4)
Length = 407
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +1
Query: 298 RRSSWRVISSIEQKT--EGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNP 471
+RS+ + +KT E E+ A + +V L I D + L D+HL+ +
Sbjct: 3 QRSNQNSVRDWVKKTTAESREKTTYAAPSWGSQVLPHLHPIMPDRMYLQDQHLLIAVKSV 62
Query: 472 ESKVFYLKMKGDSTGTLQK 528
ES Y KMK G K
Sbjct: 63 ESDESYGKMKKSGKGKESK 81
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 313 RVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 417
R++ IE+K E E ++ AKE + + E+E + IC
Sbjct: 919 RIMKEIEEK-EKKEEAERKAKEEKEREERERKRIC 952
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 358 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 459
K++M ++Y K+EKE+ Y+++ L K ++ K
Sbjct: 292 KEEMKEKYDGKIEKEMSGAIYEIISRLMKAVVGK 325
>SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)
Length = 461
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 492 QNERRFYRYLAEVATGETRHSVVEDSQESIPRCFLKSARR 611
Q +R R + E ATG +ED+ ES+ R +++R+
Sbjct: 57 QTDRLLSRDITEAATGRRPRRSLEDTLESVKRSAKETSRK 96
>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 107 ISPLPSSTMSVDKEELVQRAKLAEQAERYDDMA 205
+SPLPS+ +E+V KLAE+ E ++++
Sbjct: 643 VSPLPSTATEDQMQEVVDSNKLAEKKEVTEEVS 675
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,613,176
Number of Sequences: 59808
Number of extensions: 359275
Number of successful extensions: 1121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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