Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1250
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    24   1.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.3  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   9.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   9.6  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 483 VLPQNERRFYRYLAEVATGETRHSVVEDSQESIPRCFLKSAR 608
           VL    R+F   +A   + + R S+VE +Q+   R    SAR
Sbjct: 86  VLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASAR 127


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 557 CRGFTGKHTKMLFEISKAK 613
           C  F  +HTKML + +K K
Sbjct: 490 CVRFIAEHTKMLEDSTKVK 508


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 557 CRGFTGKHTKMLFEISKAK 613
           C  F  +HTKML + +K K
Sbjct: 490 CVRFIAEHTKMLEDSTKVK 508


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 331 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKAS-NPESKVFYLKMKGD 507
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A     +++F  K    
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIFKDKSDWF 500

Query: 508 STGTLQKWPQE 540
               + KW Q+
Sbjct: 501 DYSEVSKWVQK 511


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 373 KEYRVKVEKELREICYDV 426
           K+YRVK E+E +++  +V
Sbjct: 113 KKYRVKFEEEAKKLGINV 130


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 545 QTFCCRGFTGKHTKMLFEISK 607
           +TFCC+G+      +L E+SK
Sbjct: 455 KTFCCKGYC---MDLLKELSK 472


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 373 KEYRVKVEKELREICYDV 426
           K+YRVK E+E +++  +V
Sbjct: 113 KKYRVKFEEEAKKLGINV 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,125
Number of Sequences: 438
Number of extensions: 3220
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)