Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1245
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 32 0.048
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.11
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 0.60
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 29 0.60
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 28 1.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.8
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 26 3.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.2
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 7.3
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 7.3
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 25 7.3
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 25 7.3
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 7.3
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 9.7
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 9.7
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.7
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.7
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 32.3 bits (70), Expect = 0.048
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 212 VQEILKDMASQGDYEVKHQRWPKPPELSPIYLPVSPVMP 328
+Q IL+ +A +GD + + PKPP + I P+ P P
Sbjct: 358 LQSILRSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.1 bits (67), Expect = 0.11
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 275 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 418
P P ++P V P +PV P T++ + P ++P +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.7 bits (61), Expect = 0.60
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 257 VKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 394
VKH P PP P+ +SP MP PLT S T S PE+ P S
Sbjct: 740 VKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 0.60
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 293 SPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSXSTLV 472
SP + +PV P QPL L + T P + + L++PS+ D + NS S +
Sbjct: 281 SPFF--TAPVEPNQPLQPLRPSMTGPVPSSMGSEATLNMPSTYGIDSNLYTNSNSSSIVQ 338
Query: 473 N 475
N
Sbjct: 339 N 339
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.9 bits (59), Expect = 1.0
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +2
Query: 215 QEILKDMASQGDYEVKHQRWPKPPELSPIYLPVSPVMPVQP-LTSLTLTQTASGPETSPA 391
++I K++A+ WP PP + L V+ QP ++ + T S T P+
Sbjct: 405 RDIAKNVATWLKNGENFSSWPLPPLMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPS 464
Query: 392 SDNLSVPS---SDTWDKT*ILSINS 457
S ++ PS S T + T +LS +S
Sbjct: 465 SQSMQSPSKLHSLTSNATDLLSSSS 489
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 95 NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYEVKHQ 268
NQ S D+D+ ASS++S A D+D N+ +A GD +H+
Sbjct: 3 NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQHE 61
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 173 YVDDTDKSIAILNVQEILKDMASQGDYEVKHQRWPKPPELSPIYLPVS 316
+V D ++ +L+ I K + KH P PP S LP+S
Sbjct: 114 FVQKLDSTLRVLDYNAINKFSIDLTPVQRKHVDMPPPPVFSQTSLPMS 161
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 335 PLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSXSTLVNSDT 484
PLTS T + S T+P+ + SV + + T + S NS + S T
Sbjct: 390 PLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASST 439
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 335 PLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSXSTLVNSDT 484
PLTS T + S T+P+ + SV + + T + S NS + S T
Sbjct: 504 PLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASST 553
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +2
Query: 272 WPKPPELS-PIY-----LPVSPVMPVQPLTSLTLTQTASGPETSP 388
+P P +S P Y +PVSP +PV P +S + P + P
Sbjct: 287 YPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKP 331
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 498 GWS-DRVSELTRVDXELIDKIQVLSHVSE 415
G+S DR+ ELTR+D ++K+ L S+
Sbjct: 901 GYSVDRIWELTRIDKWFLEKLMGLIRTSQ 929
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 101 YSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAIL-NVQEILKDMASQGDYEVKHQRWP 277
Y+D+E P D + K S+++ +A+ +V + + L N I + + G + R+P
Sbjct: 158 YTDSEAPNDSEKQKNSTLLPKAYLFVPGLENIRSYLPNRHWIESNAITTGKAVEELPRFP 217
Query: 278 KPPE 289
P+
Sbjct: 218 DDPK 221
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 65 SAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQ 244
S +PSV+I +EIP + + + A DY+ T I++V ++ + S
Sbjct: 80 SVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVV--ILSS 137
Query: 245 GDYE 256
YE
Sbjct: 138 SPYE 141
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/48 (22%), Positives = 21/48 (43%)
Frame = +2
Query: 134 DGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYEVKHQRWP 277
DGK ++ + +Y ++ S + + D S GD + + R P
Sbjct: 241 DGKIQELVDKMNNYYNNDGASSWVFTADHGMSDFGSHGDGNLDNTRTP 288
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 248 DYEVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVP 412
DY ++P + SP+ + + +P S + QTA +S SD S P
Sbjct: 152 DYSKVSGKYPSVIDNSPVKSKLGALPSARPRLSYSAAQTAPISLSSEGSDYFSRP 206
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +2
Query: 275 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDK 433
P PP + P LP P M + + + P T+ N SVP + K
Sbjct: 424 PFPPFMMP-GLPQMPPMMMNAIAGQVYHNNRNPPRTNSRPSNASVPPPSSLHK 475
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 444 YQSTRHQPWSTPILCRTSPGLCG 512
+ S QP+S PIL T+P L G
Sbjct: 269 FSSPSPQPYSGPILASTAPTLDG 291
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 289 IIAHLSAGIPGDACAAANVINSYTDGVRSGNFA-GF 393
+I +A + D A N+I+ Y + GNFA GF
Sbjct: 646 LIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 681
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,507
Number of Sequences: 5004
Number of extensions: 43921
Number of successful extensions: 175
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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