Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1245
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405... 33 0.20
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 31 0.61
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 30 1.1
07_01_0310 + 2209084-2209554 29 3.2
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 29 3.2
05_04_0062 + 17607290-17608852 28 4.3
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 28 4.3
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 28 5.6
08_02_0781 - 21157715-21157783,21158869-21159087,21161181-211613... 28 5.6
08_02_0602 + 19183549-19184919 28 5.6
04_04_0658 + 27006245-27006305,27006447-27006523,27006798-270072... 28 5.6
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 27 7.5
05_01_0156 - 1048689-1049567 27 7.5
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126... 27 7.5
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 27 9.9
05_06_0282 + 26915249-26915881 27 9.9
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 27 9.9
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 27 9.9
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 27 9.9
>06_03_0649 +
23138442-23138842,23139576-23139849,23139929-23140562,
23140771-23140826,23141178-23141282,23141295-23141535,
23142686-23142690
Length = 571
Score = 32.7 bits (71), Expect = 0.20
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 275 PKPPELSPIYLPVSP-VMPVQPLTSLTL-TQTASGPE 379
P+PP+ SPI++P SP P P +SL T TA P+
Sbjct: 69 PRPPQSSPIFVPDSPNPSPAAPTSSLASGTSTARPPQ 105
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 31.1 bits (67), Expect = 0.61
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 229 GHGQPGRL*SQASAVAQTAGIIAHLSAGIPG 321
G GR S+ + V +T G+++ +S+G+PG
Sbjct: 97 GRAPAGRAASKGAGVGETLGVVSRVSSGVPG 127
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 41 FLVLLVATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWD 172
FL+LL+ +A AAP ++I Y+ R +++G + A+D
Sbjct: 10 FLLLLIVGAATAAPDMSIISYNAEHGARGLEEGPTEAEARAAYD 53
>07_01_0310 + 2209084-2209554
Length = 156
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = -1
Query: 410 GPRDCLKPAKFPDLTPSV*ELMTLAAAQASPGIPADRWAIIPAVWATADA*LHNRPGWP 234
G C D TP +TL A P IPA IPAV +A L P P
Sbjct: 7 GSSSCQAARLLADATPPAVPAVTLPPMPAIPAIPAATLPPIPAVPTVPNAALPPMPAVP 65
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 314 SPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSXSTLVNSDTLSD 493
S +P P T+ T+ ++SG + P L+ P + W K + + ++ + LSD
Sbjct: 516 SDTLP-SPTTNATVDNSSSGSQAPPPMPQLTDPHAILWQKLEAIPMTPDQRVLVGEYLSD 574
Query: 494 Q 496
+
Sbjct: 575 K 575
>05_04_0062 + 17607290-17608852
Length = 520
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +3
Query: 135 MEKLVP*SHVHGTTSMTLTKASPSSTFKRS*RTWPARAIMKSSISGGPNRRNYRP 299
+EK+ S V G + + AS SS+ RS R+ + M S+ SGGP+ Y P
Sbjct: 29 LEKIRSLSVVSGEVAGWSSSASASSS--RSARSSYYSSSMSSNASGGPHNHRYAP 81
>03_01_0218 -
1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -1
Query: 380 FPDLTPSV*ELMTLAAAQASPGIPADRWAII---PAVWATADA*LHNRPGWPCPSRSLE 213
FPD P + L+T + PG+ + + PA W ++ +R G+P P LE
Sbjct: 811 FPDDLPPIGTLVTAPSVLIHPGVLQENSTEVPPSPASWCSSPPDEMSRGGYPSPVSPLE 869
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 202 GDAFVSVIDVVPCT*DYGTSFS 137
G F SV+D VPC DY FS
Sbjct: 107 GTGFYSVVDAVPCRRDYLKMFS 128
>08_02_0781 -
21157715-21157783,21158869-21159087,21161181-21161329,
21161694-21161932,21162045-21162229
Length = 286
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 498 GWSDRVSELTRVDXELIDKIQVLSHVSEEGT 406
G S RVSEL ++ L DK+ V+ S GT
Sbjct: 59 GVSGRVSELVEIEPVLRDKVPVIRRFSGGGT 89
>08_02_0602 + 19183549-19184919
Length = 456
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 259 QASAVAQTAGIIAHLSAGIPGDACAAANVINS 354
QA+A + + A L AG+ DACA +V +S
Sbjct: 192 QAAAAGASGSVAAALPAGVLDDACADLDVTSS 223
>04_04_0658 +
27006245-27006305,27006447-27006523,27006798-27007225,
27007614-27007882,27007966-27008249
Length = 372
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 295 AHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQSLGPFF 417
+ G+PG +C+ A +N+ ++G + AG +++ P F
Sbjct: 168 SRFGVGVPGYSCSNATKVNATSEGEKPELPAGDGEAVAPVF 208
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 257 VKHQRWPKPPELSPIYLPVSPVMPVQP 337
++HQ P PP+ +P ++P V P P
Sbjct: 52 MQHQMAPAPPQFAPHFVPFHAVGPPPP 78
>05_01_0156 - 1048689-1049567
Length = 292
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 438 ESYQSTRHQPWSTPILCRTSPGLCGGGRIYDFE 536
E Y P +TP L +SP LCGGG +FE
Sbjct: 11 EDYIDMDLTPTTTP-LPPSSPRLCGGGGFREFE 42
>04_01_0122 +
1267048-1267149,1267764-1267855,1268137-1268234,
1268333-1268488,1268736-1269355,1269480-1269547,
1269848-1270099,1270390-1270525,1271054-1271246,
1271386-1271939
Length = 756
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -1
Query: 341 LAAAQASPGIPADRWAIIPAVWATAD 264
LAA A G P R AI A WAT D
Sbjct: 238 LAAGTAHGGAPRARLAIYKACWATPD 263
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 263 HQRWPKPPE--LSPIYLPVSPVMPV 331
H R P PP LSP+ LP+ P PV
Sbjct: 461 HPRSPVPPAGALSPLGLPIKPDQPV 485
>05_06_0282 + 26915249-26915881
Length = 210
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 233 MASQGDYEVKHQRWPKPPELSPIYLPVSPVMPVQPLT 343
M S D V ++WP PP P P PVQPL+
Sbjct: 119 MISDDDGGVSGRQWPAPPP------PPDPNTPVQPLS 149
>05_04_0337 -
20372378-20373094,20373320-20373379,20373992-20374266,
20374358-20374619
Length = 437
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +2
Query: 263 HQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSD 421
H +P PP L P+ P S L +S P+TS A D S SD
Sbjct: 383 HHHFPLPPSQLMPQLGTLPISPPLAAVSDKLWDWSSVPDTSTARDYDSSGFSD 435
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 260 KHQRWPKPPELSPIYLPVSPV--MPVQPLTSLTLTQTASGPETSPASDNLSV 409
+HQ P PP +P +P+ P QP T+ A P +P + S+
Sbjct: 414 QHQPQPTPPPPQAAPIPAAPLQQQPPQPQHKETIHHEAVTPRRAPPTSGSSL 465
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 107 DNEIPRDIDDGKASSVISRAWDYVDDTDK--SIAILNVQEILKDMA 238
+N P D+ +G + +I+R V +TD+ ++ + +I++D+A
Sbjct: 459 ENNTPEDVAEGNLNELINRNMLEVVETDELGRVSTCKMHDIMRDLA 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,863,619
Number of Sequences: 37544
Number of extensions: 337086
Number of successful extensions: 1270
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -