Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1243
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 645  WDDQKVRKTLTFYILENL 698
            WD  ++  T+  Y LENL
Sbjct: 1410 WDTAQISSTVQKYTLENL 1427


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 366 VFSSTTNFFLWLAIMFLYDYR 304
           +FSST +F+L L +M    Y+
Sbjct: 208 IFSSTISFYLPLFVMVFTYYK 228


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 419 TDSKT*INKKHYGMTLHRM*VLLQMNVVKNQKFKENLY*ALKK 547
           T + T I++KH  + +    +L + NV  N+   EN+    KK
Sbjct: 392 TTTSTTISQKHIKVFVVNKDILHEHNVDDNEDHDENMIIPPKK 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,766
Number of Sequences: 438
Number of extensions: 3723
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)