Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1242
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   112   2e-26
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    66   1e-12
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    56   3e-09
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    50   2e-07
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   1.1  
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    26   2.5  
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.3  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   10.0 

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  112 bits (270), Expect = 2e-26
 Identities = 47/63 (74%), Positives = 54/63 (85%)
 Frame = +1

Query: 67  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 247 PRA 255
           PRA
Sbjct: 61  PRA 63



 Score = 46.0 bits (104), Expect = 2e-06
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +2

Query: 320 RPDNFVFGQXGXGXNWAKGHYSEGA 394
           RPDN ++GQ G G  WAKGHY+EGA
Sbjct: 86  RPDNIIYGQSGAGNIWAKGHYTEGA 110



 Score = 37.1 bits (82), Expect = 0.001
 Identities = 16/25 (64%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = +3

Query: 249 PR-ILXDLEPGTMDSXRSGPFGQIF 320
           PR +L DLEPGTMD+ +SG FG +F
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLF 85


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 66.5 bits (155), Expect = 1e-12
 Identities = 27/62 (43%), Positives = 43/62 (69%)
 Frame = +1

Query: 70  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 249
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 250 RA 255
           RA
Sbjct: 63  RA 64


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 55.6 bits (128), Expect = 3e-09
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +1

Query: 67  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 240
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 241 YVPRA 255
           YVPR+
Sbjct: 61  YVPRS 65



 Score = 27.9 bits (59), Expect = 0.61
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 249 PR-ILXDLEPGTMDSXRSGPFGQIF 320
           PR I  DLEP  +D  R+GP+  +F
Sbjct: 63  PRSIYVDLEPNVIDQVRTGPYRDLF 87



 Score = 26.6 bits (56), Expect = 1.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 305 FRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
           +R    P+  + G+     N+A+GHY+ G
Sbjct: 83  YRDLFHPEQLITGKEDASNNYARGHYTVG 111


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +1

Query: 67  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 228
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 229 SGGKYVPRA 255
             GK+VPR+
Sbjct: 61  GQGKFVPRS 69



 Score = 27.9 bits (59), Expect = 0.61
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 249 PR-ILXDLEPGTMDSXRSGPFGQIF 320
           PR I  DLEP  +D  R+GP+  +F
Sbjct: 67  PRSIYVDLEPNVIDQVRTGPYKDLF 91



 Score = 25.8 bits (54), Expect = 2.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 323 PDNFVFGQXGXGXNWAKGHYSEG 391
           P+  V G+     N+A+GHY+ G
Sbjct: 93  PEQMVTGKEDASNNYARGHYTVG 115


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 106 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 207
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 364 VVXGAXLSEDEVVRTKICPKG 302
           VV G+ ++ D V+RTKICP G
Sbjct: 5   VVLGS-MNTDLVMRTKICPSG 24


>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 282 WCRAPSRXGCAGHVLAAGGFIVVYIDALQLQVRVP 178
           WC      G AG++L   G +V + D    QVR+P
Sbjct: 26  WCVMTYTFGVAGYMLGQRGLLVQHED----QVRIP 56


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 184 SDLQLERINVYYNEASGGKYVPRAS 258
           S L +E I+ Y   A   KY+PR++
Sbjct: 635 SFLDIENIDEYLESAENMKYLPRST 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,250
Number of Sequences: 5004
Number of extensions: 23831
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)