Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1242
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0) 141 2e-34
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 136 6e-33
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 6e-33
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 132 8e-32
SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 2e-09
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 55 2e-08
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 54 4e-08
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 54 6e-08
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 54 6e-08
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 6e-08
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 54 6e-08
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 53 7e-08
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 2e-07
SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27) 46 9e-06
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 9e-06
SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44) 32 0.15
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 30 0.60
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 29 1.8
SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 28 3.2
SB_9489| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 27 7.4
SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41) 26 9.8
SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41) 26 9.8
SB_18199| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 458
Score = 141 bits (342), Expect = 2e-34
Identities = 63/72 (87%), Positives = 66/72 (91%)
Frame = +1
Query: 40 IYSSHK*NKMREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYY 219
+YSS KMREIVH QAGQCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYY
Sbjct: 205 VYSSKLLFKMREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYY 264
Query: 220 NEASGGKYVPRA 255
NEA+GGKYVPRA
Sbjct: 265 NEATGGKYVPRA 276
Score = 53.6 bits (123), Expect = 6e-08
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 320 RPDNFVFGQXGXGXNWAKGHYSEGA 394
RPDNFVFGQ G G NWAKGHY+EGA
Sbjct: 299 RPDNFVFGQSGAGNNWAKGHYTEGA 323
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/25 (84%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
Frame = +3
Query: 249 PR-ILXDLEPGTMDSXRSGPFGQIF 320
PR +L DLEPGTMDS RSGPFGQIF
Sbjct: 274 PRAVLVDLEPGTMDSVRSGPFGQIF 298
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 136 bits (329), Expect = 6e-33
Identities = 59/63 (93%), Positives = 61/63 (96%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
MREIVH QAGQCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 247 PRA 255
PRA
Sbjct: 61 PRA 63
Score = 53.6 bits (123), Expect = 6e-08
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 320 RPDNFVFGQXGXGXNWAKGHYSEGA 394
RPDNFVFGQ G G NWAKGHY+EGA
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGA 110
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/25 (88%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
Frame = +3
Query: 249 PR-ILXDLEPGTMDSXRSGPFGQIF 320
PR IL DLEPGTMDS RSGPFGQIF
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIF 85
>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 136 bits (329), Expect = 6e-33
Identities = 59/63 (93%), Positives = 61/63 (96%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
MREIVH QAGQCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 247 PRA 255
PRA
Sbjct: 61 PRA 63
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/25 (88%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
Frame = +3
Query: 249 PR-ILXDLEPGTMDSXRSGPFGQIF 320
PR IL DLEPGTMDS RSGPFGQIF
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIF 85
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 132 bits (320), Expect = 8e-32
Identities = 57/63 (90%), Positives = 61/63 (96%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
MREIV +QAGQCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVSLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 247 PRA 255
PR+
Sbjct: 61 PRS 63
Score = 53.6 bits (123), Expect = 6e-08
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 320 RPDNFVFGQXGXGXNWAKGHYSEGA 394
RPDNFVFGQ G G NWAKGHY+EGA
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGA 110
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/25 (84%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
Frame = +3
Query: 249 PR-ILXDLEPGTMDSXRSGPFGQIF 320
PR +L DLEPGTMDS RSGPFGQIF
Sbjct: 61 PRSVLIDLEPGTMDSVRSGPFGQIF 85
>SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 58.4 bits (135), Expect = 2e-09
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGGK 240
MRE + + GQ G QIG WE+ EHGI P G D + + N +++E GGK
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIDGGDDSFNTFFSETGGGK 60
Query: 241 YVPRASXXTWSPA 279
+VPRA P+
Sbjct: 61 HVPRAVFVDLEPS 73
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 55.2 bits (127), Expect = 2e-08
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 240
MRE + I GQ G QIG WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 241 YVPRA 255
+VPRA
Sbjct: 61 HVPRA 65
Score = 53.2 bits (122), Expect = 7e-08
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGKY 243
RE + I GQ G QIG WE+ EHGI P G D + + N +++E GK+
Sbjct: 435 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 494
Query: 244 VPRA 255
VPRA
Sbjct: 495 VPRA 498
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ V G+ N+A+GHY+ G
Sbjct: 82 TYRQLFHPEQLVTGKEDAANNYARGHYTVG 111
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 515 TYRQLFHPEQLITGKEDAANNYARGHYTVG 544
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 54.0 bits (124), Expect = 4e-08
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 240
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 241 YVPRA 255
+VPRA
Sbjct: 61 HVPRA 65
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 82 TYRQLFHPEQLITGKEDAANNYARGHYTIG 111
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 53.6 bits (123), Expect = 6e-08
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 240
MRE + I GQ G QIG WE+ EHGI P G D + N +++E GK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTQGGGDDSFNTFFSETGAGK 60
Query: 241 YVPRA 255
+VPRA
Sbjct: 61 HVPRA 65
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 317 LRPDNFVFGQXGXGXNWAKGHYSEG 391
L P+ + G+ N+A+GHY+ G
Sbjct: 77 LSPEQLITGKEDAANNYARGHYTIG 101
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 53.6 bits (123), Expect = 6e-08
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 320 RPDNFVFGQXGXGXNWAKGHYSEGA 394
RPDNFVFGQ G G NWAKGHY+EGA
Sbjct: 31 RPDNFVFGQSGAGNNWAKGHYTEGA 55
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/25 (84%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
Frame = +3
Query: 249 PR-ILXDLEPGTMDSXRSGPFGQIF 320
PR +L DLEPGTMDS RSGPFGQIF
Sbjct: 6 PRAVLVDLEPGTMDSVRSGPFGQIF 30
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 53.6 bits (123), Expect = 6e-08
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 240
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGSGK 60
Query: 241 YVPRA 255
+VPRA
Sbjct: 61 HVPRA 65
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 82 TYRQLFHPEQLITGKEDAANNYARGHYTVG 111
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 53.6 bits (123), Expect = 6e-08
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 240
+RE + I GQ G QIG WE+ EHGI P G D + + N +++E GK
Sbjct: 586 VRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 645
Query: 241 YVPRA 255
+VPRA
Sbjct: 646 HVPRA 650
Score = 53.2 bits (122), Expect = 7e-08
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGKY 243
RE + I GQ G QIG WE+ EHGI P G D + + N +++E GK+
Sbjct: 514 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 573
Query: 244 VPRA 255
VPRA
Sbjct: 574 VPRA 577
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGKY 243
RE + + GQ G QIG WE+ EHGI P G D + + N +++E GK+
Sbjct: 66 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 125
Query: 244 VPRA 255
VPRA
Sbjct: 126 VPRA 129
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 667 TYRQLFHPEQLITGKEDAANNYARGHYTVG 696
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 146 TYRQLFHPEQLITGKEDAANNYARGHYTIG 175
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 53.2 bits (122), Expect = 7e-08
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGKY 243
RE + I GQ G QIG WE+ EHGI P G D + + N +++E GK+
Sbjct: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
Query: 244 VPRA 255
VPRA
Sbjct: 61 VPRA 64
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 81 TYRQLFHPEQLITGKEDAANNYARGHYTVG 110
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 52.8 bits (121), Expect = 1e-07
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 70 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGKY 243
RE V I GQ G Q+G WE+ EHGI P G D + + N +++E GK+
Sbjct: 420 RECVSIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 479
Query: 244 VPRASXXTWSPA 279
VPRA P+
Sbjct: 480 VPRAVFVDLEPS 491
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 112 IGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGKYVPRA 255
+G WE+ EHGI P G D + + N +++E GK+VPRA
Sbjct: 1 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRA 50
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 67 TYRQLFHPEQLITGKEDAANNYARGHYTVG 96
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 500 TYRQLFHPEQLITGKEDAANNYARGHYTVG 529
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 249 PR-ILXDLEPGTMDSXRSGPFGQIF 320
PR + DLEP +D R+G + Q+F
Sbjct: 481 PRAVFVDLEPSVIDEIRTGTYRQLF 505
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 52.0 bits (119), Expect = 2e-07
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGKY 243
RE + I GQ G QIG WE+ EHGI P G D + + N ++ E GK+
Sbjct: 373 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFAETGAGKH 432
Query: 244 VPRA 255
VPRA
Sbjct: 433 VPRA 436
Score = 51.6 bits (118), Expect = 2e-07
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGKY 243
RE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK+
Sbjct: 806 RECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 865
Query: 244 VPRA 255
VPRA
Sbjct: 866 VPRA 869
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 453 TYRQLFHPEQLITGKEDAANNYARGHYTVG 482
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 886 TYRQLFHPEQLITGKEDAANNYARGHYTVG 915
>SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)
Length = 144
Score = 46.4 bits (105), Expect = 9e-06
Identities = 19/25 (76%), Positives = 19/25 (76%)
Frame = +2
Query: 320 RPDNFVFGQXGXGXNWAKGHYSEGA 394
RPDNFV Q G NWAKGHYSEGA
Sbjct: 42 RPDNFVNSQSGAANNWAKGHYSEGA 66
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/25 (68%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +3
Query: 249 PR-ILXDLEPGTMDSXRSGPFGQIF 320
PR IL DLEPGTMD+ R GP G +F
Sbjct: 17 PRSILVDLEPGTMDAVRGGPLGNMF 41
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 46.4 bits (105), Expect = 9e-06
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER----INVYYNEASG 234
MRE + I GQ G QIG WE+ EHGI P G H SD +R + +++E +
Sbjct: 196 MRECLSIHVGQAGVQIGNACWELYCLEHGIQPDG--HMPSDQSADRCDDSFSTFFSETAS 253
Query: 235 GKYVPRAS 258
GK+ + +
Sbjct: 254 GKHADQCT 261
>SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 44.8 bits (101), Expect = 3e-05
Identities = 18/35 (51%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +1
Query: 124 FWEIISDEHGIDPTGAYHG-DSDLQLERINVYYNE 225
FWE+I++EHGIDP G S +Q +R+NVY++E
Sbjct: 1 FWEVIAEEHGIDPDGQCTAVQSKIQTDRLNVYFDE 35
>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
Length = 474
Score = 32.3 bits (70), Expect = 0.15
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +1
Query: 76 IVHIQAGQCGNQIGAKFWEIISDE 147
IV +Q GQCGNQIG + +++I ++
Sbjct: 3 IVTLQLGQCGNQIGRELFDLIVED 26
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 30.3 bits (65), Expect = 0.60
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R PD + G+ N+A+GHY+ G
Sbjct: 7 TYRDLFHPDQLITGKEDAANNYARGHYTVG 36
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 19 TYRQLFHPEQLITGKEDAANNYARGHYTVG 48
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 7 TYRQLFHPEQLITGKEDAANNYARGHYTVG 36
>SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 7 TYRQLFHPEQLITGKEDAANNYARGHYTVG 36
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 47 TYRQLFHPEQLLSGKEDAANNYARGHYTVG 76
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 TFRTDLRPDNFVFGQXGXGXNWAKGHYSEG 391
T+R P+ + G+ N+A+GHY+ G
Sbjct: 7 TYRQLFHPEQLLSGKEDAANNYARGHYTVG 36
>SB_9489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 222 IVVYIDALQLQVRVPM-VGTGGVDAVLVGDDLPEL 121
I VY DA++LQV P+ G+D + V D EL
Sbjct: 48 ITVYADAVELQVTYPLRAPLRGIDLITVYADAVEL 82
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 344 QXGXGXNWAKGHYSEGA 394
Q NWAKG Y+EGA
Sbjct: 2 QNSAANNWAKGFYTEGA 18
>SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
Length = 700
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 167 PVGSMPCSSEMISQNLAPIWLPH*PAWICT 78
P + PC +++ S+ L IW + AWI T
Sbjct: 273 PTANPPCFAKLDSECLPVIWRANRRAWITT 302
>SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
Length = 700
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 167 PVGSMPCSSEMISQNLAPIWLPH*PAWICT 78
P + PC +++ S+ L IW + AWI T
Sbjct: 273 PTANPPCFAKLDSECLPVIWRANRRAWITT 302
>SB_18199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 258 GCAGHVLAAGGFIVVYIDALQLQVRVPMVGTGGVDAVLVG 139
GC V+ AGG V + A+ V V VG GG +VG
Sbjct: 149 GCGVAVVGAGGCGVAVVGAVGCGVAV--VGAGGCGVAVVG 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,192,350
Number of Sequences: 59808
Number of extensions: 209940
Number of successful extensions: 485
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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