Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1241
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 138 2e-34
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 138 4e-34
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 1.9
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 2.5
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 25 3.3
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 5.7
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 24 7.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 24 10.0
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 24 10.0
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 24 10.0
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 24 10.0
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 24 10.0
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 24 10.0
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 10.0
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 24 10.0
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 138 bits (335), Expect = 2e-34
Identities = 66/109 (60%), Positives = 77/109 (70%)
Frame = +3
Query: 72 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRXPXXVSKEAG 251
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN R P VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 252 HKPVPNHGVPGRAVXRIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTXPW 398
H+ GRA+ RIPRV GGGTHRSGQ AFGNMCR GRMFAPT W
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTW 108
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 138 bits (333), Expect = 4e-34
Identities = 65/109 (59%), Positives = 77/109 (70%)
Frame = +3
Query: 72 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRXPXXVSKEAG 251
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN R P VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 252 HKPVPNHGVPGRAVXRIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTXPW 398
H+ GRA+ RIPRV GGGTHRSGQ AFGNMCR GRMFAPT W
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTW 108
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 1.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 133 APCTVSLFSEYTDTKGRATDRLISLL 56
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 2.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 71 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 181
SI SP+ SVG + D + S + P+ I G + P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 146 PVRIQGAHTSGPGQ*CSRFYVQELEAXLLXXQ 241
PV +QG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 5.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 243 EAGHKPVPNHGVPGR 287
E+GHKP+PN P R
Sbjct: 33 ESGHKPLPNMHRPSR 47
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 24.2 bits (50), Expect = 7.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 122 GAGCSQAPPVRIQGAHTSGPGQ*CSRFYVQELE 220
G G S PP I+G S + RF+ + LE
Sbjct: 131 GMGNSSRPPFDIKGQTASEKVEETERFFTESLE 163
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 370 PPRHMLPKAP*PDLWVPPP 314
PP+ P P P + VPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 190 SLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTKGRATDRL 68
SL+ S R+GAL++ + + C + T +G + DR+
Sbjct: 325 SLSLSARIGALHSLNKKQVSLCDRFMLGGSTSLRGFSEDRI 365
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 60 SEMSLSVARPLVSVYSE 110
SEMSL++A P+ + Y+E
Sbjct: 96 SEMSLTIALPISAAYTE 112
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +3
Query: 225 PXXVSKEAGHKPVPNHGVPGRAVXRIPRVR 314
P EAG +P P+ G P + VR
Sbjct: 144 PQFFHSEAGERPTPSVGAPSSLASSMDSVR 173
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 108 LNTPTLKVGLPIDSFRYFSEAIPPKYTL 25
+N PT+ G P S +IPP + +
Sbjct: 235 MNNPTIPKGTPSTSIEGAKTSIPPSHAM 262
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -1
Query: 369 HHDTCYRRHPDRTYGYHHHGH 307
HH Y H +G+ HH H
Sbjct: 17 HHTHDYDHHNHDHHGHDHHSH 37
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 333 TYGYHHHGHAEFGQQHVRVPHDSA 262
T+ Y HH H G H HDS+
Sbjct: 19 THDYDHHNHDHHGHDH--HSHDSS 40
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2
Query: 248 WSQTSAESWGT 280
W+Q SA SWGT
Sbjct: 559 WNQLSAPSWGT 569
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 354 YRRHPDRTYGYHH 316
YRR +TYGY+H
Sbjct: 411 YRREITQTYGYYH 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,538,002
Number of Sequences: 5004
Number of extensions: 28391
Number of successful extensions: 83
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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