Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1241
(399 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 120 5e-28
AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever sho... 29 1.2
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 29 1.2
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho... 29 1.2
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 27 3.7
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 27 3.7
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 3.7
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 27 6.5
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 27 6.5
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 27 6.5
AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical... 27 6.5
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 27 6.5
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 27 6.5
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p... 26 8.7
Z47811-4|CAD57701.1| 422|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF160248-1|AAD45518.1| 860|Caenorhabditis elegans ribonuclease ... 26 8.7
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 120 bits (288), Expect = 5e-28
Identities = 60/102 (58%), Positives = 70/102 (68%)
Frame = +3
Query: 81 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRXPXXVSKEAGHKP 260
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N R V+ +AG +
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 261 VPNHGVPGRAVXRIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 386
GRAV RIPRVRGGGTHRSGQGAFGNMCRGG MFAP
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAP 103
>AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform b protein.
Length = 461
Score = 29.1 bits (62), Expect = 1.2
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Frame = +3
Query: 84 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRXPXXVSKEAGHK 257
RP + +Y G+ K L + P RP+ +N +MS NSR + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 258 PVPNHGVPGRAVXRIPRVRGGGTHRSGQG 344
P V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 29.1 bits (62), Expect = 1.2
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Frame = +3
Query: 84 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRXPXXVSKEAGHK 257
RP + +Y G+ K L + P RP+ +N +MS NSR + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 258 PVPNHGVPGRAVXRIPRVRGGGTHRSGQG 344
P V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform a protein.
Length = 1241
Score = 29.1 bits (62), Expect = 1.2
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Frame = +3
Query: 84 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRXPXXVSKEAGHK 257
RP + +Y G+ K L + P RP+ +N +MS NSR + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 258 PVPNHGVPGRAVXRIPRVRGGGTHRSGQG 344
P V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 129 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 28
P S +S N PT+K+ L I+ YF PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 369 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 286
HHD +++H + + HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -1
Query: 369 HHDTCYRRHPDRTYGYHHHGH--AEFGQQHVRVPH 271
HH + H D+ +HHHGH +QH + H
Sbjct: 698 HHGAHHGHHDDKE-NHHHHGHHSKHSKKQHTKKSH 731
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 172 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 59
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 172 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 59
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 300 IPRVRGGGTHRSGQGAFGNMCRGG 371
+P GGG S Q A GN C GG
Sbjct: 26 LPGAGGGGCCSSAQPACGNPCGGG 49
>AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical
protein Y53F4B.25 protein.
Length = 603
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 321 HHHGHA-EFGQQHVRVPHDSAL 259
HHHG A FGQQ + +P +A+
Sbjct: 328 HHHGFARTFGQQPIPLPSQAAI 349
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 181 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 68
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 181 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 68
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597
>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
protein F26E4.10 protein.
Length = 1086
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 363 DTCYRRHPDRTYGYHHHGHAEFGQQHVRVPHDSALVCD 250
D YRR P YHH GH + + A+VCD
Sbjct: 886 DFLYRRFP-----YHHEGHMSLLRTSLVSNQTQAVVCD 918
>Z47811-4|CAD57701.1| 422|Caenorhabditis elegans Hypothetical
protein K02C4.5 protein.
Length = 422
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 379 NIRPPRHMLPKAP*PDLWVPPPRT 308
NIRPP PK PD PPP+T
Sbjct: 312 NIRPPIAQKPKLIQPDT-TPPPKT 334
>AF160248-1|AAD45518.1| 860|Caenorhabditis elegans ribonuclease
protein.
Length = 860
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 363 DTCYRRHPDRTYGYHHHGHAEFGQQHVRVPHDSALVCD 250
D YRR P YHH GH + + A+VCD
Sbjct: 660 DFLYRRFP-----YHHEGHMSLLRTSLVSNQTQAVVCD 692
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,768,141
Number of Sequences: 27780
Number of extensions: 180325
Number of successful extensions: 556
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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