Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1241
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 130 3e-31
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 128 1e-30
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 0.21
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 28 2.6
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 4.6
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 27 4.6
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 27 4.6
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain... 27 4.6
At3g29600.1 68416.m03720 hypothetical protein 27 6.1
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 27 6.1
At4g22790.1 68417.m03289 MATE efflux family protein contains Pfa... 26 8.0
At3g47240.1 68416.m05129 hypothetical protein 26 8.0
At2g42260.1 68415.m05231 expressed protein and genefinder 26 8.0
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 130 bits (314), Expect = 3e-31
Identities = 64/113 (56%), Positives = 77/113 (68%), Gaps = 2/113 (1%)
Frame = +3
Query: 66 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRXPXXVS 239
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSR P VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 240 KEAGHKPVPNHGVPGRAVXRIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTXPW 398
K+AGH+ GRAV RIPRV GGGTHR+GQ AFGNMCRGGRMFAPT W
Sbjct: 61 KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIW 113
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 128 bits (309), Expect = 1e-30
Identities = 64/110 (58%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = +3
Query: 75 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRXPXXVSKEA 248
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSR P VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 249 GHKPVPNHGVPGRAVXRIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTXPW 398
GH+ GRAV RIPRV GGGTHR+GQ AFGNMCRGGRMFAPT W
Sbjct: 65 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIW 114
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 31.5 bits (68), Expect = 0.21
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 369 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRVPH 271
HH Y H YGY +HGH +F +H + H
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF--KHGKFKH 152
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -1
Query: 369 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRVPHD 268
HHD + H D + + HH H G H HD
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHD--GHDHHHHSHD 342
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 65 NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 202
N +I +PT S+ G S V + GAHT G + C+ F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 90 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSR 221
LV +++ SE+++ PLPF K+P +PD++ H + NS+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSK 392
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 27.1 bits (57), Expect = 4.6
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +3
Query: 258 PVPNHGVPGRAVXRIPR----VRGGGTHRSGQGAFGNMCRGGR-MFAP 386
PVP PGR + P + GGG G GN RGGR M+ P
Sbjct: 560 PVPGMMFPGRPPQQFPHGGYGMMGGG-RGPHMGGMGNAPRGGRPMYYP 606
>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to CLATHRIN
COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
SWISSPROT:Q61548
Length = 599
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 129 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 31
PAPS ++ N + +P+D F E PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551
>At3g29600.1 68416.m03720 hypothetical protein
Length = 164
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 369 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVR-VPHDSALVCDQPPC 238
H D C R HP +G + G Q+ VR V H + P C
Sbjct: 59 HKDKCIRTHPRIAHGCNLTGKGRKHQEWVRNVIHHIGSISRLPSC 103
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 144 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPPKY 31
G W+H SH+ ++ L VG+ + Y+S + P +Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At4g22790.1 68417.m03289 MATE efflux family protein contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 491
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +2
Query: 239 QGGWSQTSAESWGT-----RTCCXPNSACPWWW 322
QGGW SA+ W T CC + C WW
Sbjct: 242 QGGWLNQSAQDWLTLIKLSGPCCL--TVCLEWW 272
>At3g47240.1 68416.m05129 hypothetical protein
Length = 239
Score = 26.2 bits (55), Expect = 8.0
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 384 GRTYVHHDTCYRRHPDRTYGYHHHGHAEFGQQHVR-VPHDSALVCDQPPC 238
GR+ D C R HP +G + G Q+ VR V H + P C
Sbjct: 133 GRSSDGRDKCIRTHPRVAHGCNLTGKGRKHQEWVRNVIHHMGSISRLPSC 182
>At2g42260.1 68415.m05231 expressed protein and genefinder
Length = 259
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +3
Query: 255 KPVPNHGVPGRAVXRIPRVRGGGTHRSGQGAF---GNMCRG 368
+P H + G V R+P GG GQG+ G + RG
Sbjct: 30 EPATQHNLFGSPVQRVPSEATGGLGSIGQGSMTGRGGLVRG 70
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,477,455
Number of Sequences: 28952
Number of extensions: 174592
Number of successful extensions: 590
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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