Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1240
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 28 1.0
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 4.1
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 25 7.1
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 7.1
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 7.1
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.4
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 9.4
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 25 9.4
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 436 PMVRVHLHV**SGCGKFNFCIQILEEINRALQS-NTYLTGQFLTIADVALYYIVYPFY 606
P + ++ + G G FN+C I+EEIN + + L + +AD V P Y
Sbjct: 347 PFILMYFGIVGVGNGIFNYCTLIIEEINPSFSGIDISLLNAPIWLADALGIVTVMPLY 404
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 566 LLMLHYIT*CIPFTGAYV 619
+L HY++ C P+TG++V
Sbjct: 223 VLFFHYLSDCSPYTGSFV 240
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 502 ILEEINRALQSNTYLTGQFLTIADV 576
I + L S TYL G LT+AD+
Sbjct: 136 IFARFDEELASKTYLVGSRLTLADI 160
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.4 bits (53), Expect = 7.1
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -1
Query: 426 SRCSSLLAVPHFETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 286
S+ +S A ETI+ V STF S T GT+ V+ TA T T
Sbjct: 203 SKTTSPTAGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTIT 249
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 390 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 286
ETI+ V STF S T GT+ V+ TA T T
Sbjct: 565 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 599
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 390 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 286
ETI+ V STF S T GT+ V+ TA T T
Sbjct: 600 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 634
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 390 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 286
ETI+ V STF S T GT+ V+ TA T T
Sbjct: 740 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 774
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 390 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 286
ETI+ V STF S T GT+ V+ TA T T
Sbjct: 355 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTIT 389
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 390 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 286
ETI+ T STF S T GT+ V+ TA T T
Sbjct: 495 ETIVSGSKTFTSTFPASGTTSGTVEVVEPTAGTIT 529
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 390 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 286
ETI+ V STF S T GT+ V+ TA T T
Sbjct: 635 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTIT 669
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 487 NFCIQILE--EINRALQSNTYLTGQFLTIADVALYY 588
N C++ +E + LQS YLT T + +ALYY
Sbjct: 266 NQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYY 301
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = +2
Query: 356 EGFVTIILSMVSKCGTASSEEQRLLTYQWLEYIXMFSNQ 472
E F+ ++ S + + T + E ++ +W+E + +SN+
Sbjct: 1244 ESFIVLLGSCIKQLKTENFLEYKVTFAKWVEILLSYSNE 1282
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 622 TDICSSKRDTLCNIMQHQQLLETGQSDMCYFVELC 518
++ C S N++ L++ G+ D C +ELC
Sbjct: 404 SEFCISSSLRHPNVIHTLDLIQDGKGDYCEVMELC 438
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 426 SRCSSLLAVPHFETILKMIVTKPS 355
S C+ +AVP F +K++ KPS
Sbjct: 174 SGCNDGMAVPFFYFAIKLLTVKPS 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,076
Number of Sequences: 5004
Number of extensions: 53269
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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