Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1240
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899...    29   2.4  
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...    29   2.4  
01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932     29   3.2  
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205     29   3.2  
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274...    29   4.2  
07_01_0243 - 1783903-1784658                                           27   9.7  
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    27   9.7  
01_04_0027 + 15216424-15216672                                         27   9.7  

>06_03_0529 -
           21788132-21788395,21788414-21788511,21789458-21789953,
           21790033-21790134,21790218-21790270,21790354-21790414,
           21790491-21790640,21791298-21791350,21794125-21794152
          Length = 434

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 505 LEEINRALQSNTYLTGQFLTIADVALYYIVY 597
           L  +N  L SNTYL G  +T+AD+ +   +Y
Sbjct: 162 LGALNTHLASNTYLVGHSVTLADIVMTCNLY 192


>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 505 LEEINRALQSNTYLTGQFLTIADVALYYIVY 597
           L  +N  L SNTYL G  +T+AD+ +   +Y
Sbjct: 147 LGALNTHLASNTYLVGHSVTLADIVMTCNLY 177



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 505 LEEINRALQSNTYLTGQFLTIADVALYYIVY 597
           L  +N  L SNTYL G  +T+AD+ +   +Y
Sbjct: 708 LGALNTHLASNTYLVGHSVTLADIVMTCNLY 738


>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
          Length = 219

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 499 QILEEINRALQSNTYLTGQFLTIADVALYYIVYPFYW 609
           ++LE     L  +TYL G F++ AD  L +  Y FY+
Sbjct: 145 KVLEVYEARLSQSTYLAGDFVSFAD--LNHFPYTFYF 179


>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
          Length = 220

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 499 QILEEINRALQSNTYLTGQFLTIADVALYYIVYPF 603
           ++LE     L  NTYL G FL+  D++ +   + F
Sbjct: 145 KVLEVYEARLSQNTYLAGNFLSFVDLSHFPFTFYF 179


>05_01_0350 +
           2736096-2736242,2736460-2736508,2736704-2737046,
           2743911-2744499
          Length = 375

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 499 QILEEINRALQSNTYLTGQFLTIADVALYYIVYPFY 606
           ++LE   R L  + YL G F+++AD  L +  Y +Y
Sbjct: 142 KVLEVYERRLSESEYLAGDFVSVAD--LNHFPYTYY 175


>07_01_0243 - 1783903-1784658
          Length = 251

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 368 SQNPQHFYFQVRQWELCLYYNKRPRLKHLNIFRSS*LHHIIGTH 237
           S +P +F    RQ +LC +YN R      ++ +SS L  I   H
Sbjct: 129 SSSPANFVVSARQEDLCSHYNARMMKVDWSLVQSSLLCLISRNH 172


>06_03_1283 -
           28957729-28959258,28959354-28959550,28959824-28960026,
           28960097-28960424,28960524-28960661,28960765-28961020,
           28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 581 NATSAIVRNWPVRYVLLCRALFISS 507
           N +  I   WP  YVLLC  L + S
Sbjct: 81  NGSEKITNKWPSPYVLLCGLLLVVS 105


>01_04_0027 + 15216424-15216672
          Length = 82

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 499 QILEEINRALQSNTYLTGQFLTIADVA 579
           ++LE     L  NTYL G+F++ A+++
Sbjct: 49  KVLEVYEAHLSENTYLAGEFVSFANIS 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,085,449
Number of Sequences: 37544
Number of extensions: 276762
Number of successful extensions: 439
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)