Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1238
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28130.2 68416.m03511 nodulin MtN21 family protein similar to... 29 2.5
At3g28130.1 68416.m03510 nodulin MtN21 family protein similar to... 29 2.5
At3g53320.1 68416.m05883 expressed protein 29 3.3
At3g24040.1 68416.m03019 glycosyltransferase family 14 protein /... 29 3.3
At1g32550.1 68414.m04017 ferredoxin family protein similar to fe... 29 3.3
At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb... 28 4.3
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb... 28 4.3
At4g25090.1 68417.m03604 respiratory burst oxidase, putative / N... 27 7.5
At5g51060.1 68418.m06329 respiratory burst oxidase protein C (Rb... 27 10.0
At5g50375.1 68418.m06239 cyclopropyl isomerase (CPI1) 27 10.0
>At3g28130.2 68416.m03511 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 230
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 432 MGIQVVQEEPLVWFLDFPTTLLCPVVS*IF 343
+GI + P +W + F TL+C VV IF
Sbjct: 110 IGIVAEKNNPSIWIIHFDITLVCIVVGGIF 139
>At3g28130.1 68416.m03510 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 269
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 432 MGIQVVQEEPLVWFLDFPTTLLCPVVS*IF 343
+GI + P +W + F TL+C VV IF
Sbjct: 149 IGIVAEKNNPSIWIIHFDITLVCIVVGGIF 178
>At3g53320.1 68416.m05883 expressed protein
Length = 553
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 384 SLKTKPMVLPGQPGFPFKSEKTDSDYAERKFKSS 485
S + KP VLP +PG PFKS SD ++ + SS
Sbjct: 292 SRRAKP-VLP-KPGVPFKSSSRSSDASKNEMTSS 323
>At3g24040.1 68416.m03019 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 417
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 372 GWLESLKTKPMVLPGQPGFPFKSEKTDSDYAERK 473
GW ES K KP+++ PG + EKTD +A +K
Sbjct: 203 GWKESRKLKPVIV--DPGL-YLVEKTDMFFASQK 233
>At1g32550.1 68414.m04017 ferredoxin family protein similar to
ferredoxin from Synechocystis sp. [GI:48019]; contains
Pfam profile PF00111 2Fe-2S iron-sulfur cluster binding
domain
Length = 181
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 121 LLTPSPFCISHTKTSFPFT-GYATNYRHRFNTRCLCHF 11
L+ P FC S K +FP Y TN+R R T C F
Sbjct: 3 LILPCTFCTSLQKKNFPINRRYITNFR-RGATTATCEF 39
>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
(RbohB) / NADPH oxidase identical to respiratory burst
oxidase protein B from Arabidopsis thaliana [gi:3242783]
Length = 843
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 283 YISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGW 381
+ S L +I +L H YF YL +W K W
Sbjct: 481 WYSHHLFVIVYVLLIVHGYFVYLSKEWYHKTTW 513
>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
(RbohB) / NADPH oxidase identical to respiratory burst
oxidase protein B from Arabidopsis thaliana [gi:3242783]
Length = 622
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 283 YISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGW 381
+ S L +I +L H YF YL +W K W
Sbjct: 481 WYSHHLFVIVYVLLIVHGYFVYLSKEWYHKTTW 513
>At4g25090.1 68417.m03604 respiratory burst oxidase, putative /
NADPH oxidase, putative similar to respiratory burst
oxidase protein A from Arabidopsis thaliana, gb:AF055353
[gi:3242781], protein D [gi:3242789]; contains Pfam
profile PF01794 Ferric reductase like transmembrane
component
Length = 849
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 298 LGLIAVAMLSTHYYFKYLGNDWTKKGGW 381
L +I +L H Y+ YL +W KK W
Sbjct: 493 LFVIVYILLVLHGYYIYLNKEWYKKTTW 520
>At5g51060.1 68418.m06329 respiratory burst oxidase protein C
(RbohC) / NADPH oxidase nearly identical to respiratory
burst oxidase protein C from Arabidopsis thaliana
[gi:3242785]
Length = 905
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 298 LGLIAVAMLSTHYYFKYLGNDWTKKGGW 381
L +I +L H Y+ YL DW K W
Sbjct: 540 LFVIVYILLVAHGYYLYLTRDWHNKTTW 567
>At5g50375.1 68418.m06239 cyclopropyl isomerase (CPI1)
Length = 280
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 328 THYYFKYLGNDWTKKGGWKV*K-PNQWFFLDNL 423
THY+FK LG +T WK+ P+ FFL ++
Sbjct: 105 THYFFKVLGASYTFP-SWKMNNVPHTTFFLTHV 136
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,456,107
Number of Sequences: 28952
Number of extensions: 289130
Number of successful extensions: 745
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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