Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1232
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 54 1e-07
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 46 3e-05
12_01_0112 - 860330-861946 31 1.2
09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757 30 2.0
07_02_0027 - 11963040-11963294 29 2.7
07_01_0548 - 4061829-4062956 29 3.5
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 29 3.5
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281... 29 3.5
01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710 29 3.5
10_01_0059 + 806112-806405 29 4.7
07_01_0829 - 6703293-6703547 29 4.7
04_03_0445 - 16010516-16010770 29 4.7
02_03_0023 + 14031335-14031589 29 4.7
01_01_1074 + 8460072-8460326 29 4.7
11_01_0756 - 6352810-6353064 28 6.2
12_01_0355 - 2704909-2705745 28 8.2
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310... 28 8.2
07_01_0726 - 5543633-5543887 28 8.2
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVK 460
+GPYSQAI A+ +++SG+LGL+ + + N+ +L+A GAS SVVK
Sbjct: 69 LGPYSQAIKANNMVFVSGVLGLN--------------PEVMKNMGEILKASGASYSSVVK 114
Query: 461 TTGLLASMDDFQTFNKSMQNIF 526
TT +LA + DF+ N+ F
Sbjct: 115 TTIMLADLQDFKKVNEIYAKYF 136
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 505 QIYAEYFPKACPARMTYEVSRLP 573
+IYA+YFP PAR TY+V+ LP
Sbjct: 130 EIYAKYFPAPAPARSTYQVAALP 152
>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGLDRDAQMVC-GGAEAQTRQALDNLRHVLEAGGASLES 451
+GPYSQA L + LY++G LGLD +C GG A+ AL N V A G S+ S
Sbjct: 870 IGPYSQATLHGEILYMAGQLGLDPPTMKLCPGGPTAELEFALRNSEAVANAFGCSIFS 927
>12_01_0112 - 860330-861946
Length = 538
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +2
Query: 344 LDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKTTGLLAS 481
++RD+ GGA ++R+A + L+ GG ++++V KT +A+
Sbjct: 284 VERDSAASSGGANGRSRRASLSGAGALQGGGGAMQTVAKTVDEVAA 329
>09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757
Length = 817
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 436 RFVGVGRENYWFVG*HGRLPNFQQIYAEYFPKACPARMT-YEVSRL 570
RF+GV + +W G RLP F + +FP+ R+T Y+ S L
Sbjct: 150 RFLGVESDPWWDAG--VRLPGFAGVTPAFFPERSGCRVTLYQNSHL 193
>07_02_0027 - 11963040-11963294
Length = 84
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q +V+ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYVSQDTPPDIDFRDRHGYSPTVSPDTVRRYESTI 53
>07_01_0548 - 4061829-4062956
Length = 375
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 456 TTDSNEAPPASSTCRRLSRA*RVCASAPPQTICASRSNPRIPEMYKVLSA 307
TT + A+ LS A ++C++ PP + +NPR+ Y L A
Sbjct: 5 TTTTTLPAAAALLLLLLSAAAQLCSACPPAASQTAENNPRLQRAYVALQA 54
>05_01_0002 -
8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 268 NISTSRSVQSSNFSGQDLIHFWNSRIGSRCTDGLRWC*SADPSG 399
NIST RSV+SS+ S + H SR G+ C SA P+G
Sbjct: 816 NISTERSVESSHLSRPEQNH---SRANMEVKPGINAC-SATPAG 855
>03_06_0110 -
31727376-31727381,31727554-31727664,31728071-31728133,
31729202-31729331,31729532-31729701,31729800-31729859,
31729941-31730018,31730108-31730197,31730275-31731118,
31731220-31731281,31731362-31731423,31731511-31731700
Length = 621
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 438 APPASSTCRRLSRA*RVCASAPPQTICASRSNPR 337
APP S C ++ + C P + +C S SNP+
Sbjct: 226 APPLSEVCSKMRKLNLACREVPSRYLCQS-SNPK 258
>01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710
Length = 176
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 12 TPTRSHNIQAYIRQDTPPDIDLKDRHGYSPTVSPDTVRRYESAI 55
>10_01_0059 + 806112-806405
Length = 97
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>07_01_0829 - 6703293-6703547
Length = 84
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>04_03_0445 - 16010516-16010770
Length = 84
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQANIRQDTPPDIDFTDRHGYSPTVSPDTVRRYESAI 53
>02_03_0023 + 14031335-14031589
Length = 84
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>01_01_1074 + 8460072-8460326
Length = 84
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFKDRHGYSPTVSPDTVRRYESAI 53
>11_01_0756 - 6352810-6353064
Length = 84
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQANIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>12_01_0355 - 2704909-2705745
Length = 278
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -1
Query: 452 PTPTKRHQLQVHVADCPEPDGSALQHHRRPSVHLDPIREFQKCIRSCPLKLLDCTD 285
P P R + VAD DGS+L RP R C++S LL CT+
Sbjct: 72 PPPPVRAASWIDVADDKSKDGSSLDALLRPKSSAVK-RSASFCLKSSESSLLLCTE 126
>09_02_0027 +
3105963-3106276,3106298-3107027,3107069-3107134,
3107192-3107324,3108985-3109088
Length = 448
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 481 HGRLPNFQQIYAEYFPKA 534
HGR+P+FQQ E PKA
Sbjct: 165 HGRIPSFQQTRDESIPKA 182
>07_01_0726 - 5543633-5543887
Length = 84
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTSSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,848,409
Number of Sequences: 37544
Number of extensions: 410863
Number of successful extensions: 1116
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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