Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1228
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044     90   1e-18
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...    85   4e-17
05_03_0052 + 7827973-7828031,7829012-7829139,7829243-7829305,783...    28   4.9  
12_02_0154 + 14494319-14495857                                         28   6.5  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   8.6  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 39/79 (49%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
 Frame = +1

Query: 22  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWFG 198
           K I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WFG
Sbjct: 2   KTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFG 61

Query: 199 SKKELAAVRTVCSHVENMI 255
           +++ +AA+RT  SHV+N+I
Sbjct: 62  TRRTMAAIRTAISHVQNLI 80



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 29/39 (74%), Positives = 32/39 (82%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 374
           GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK
Sbjct: 82  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 23/43 (53%), Positives = 32/43 (74%)
 Frame = +2

Query: 362 LG*EIIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAL 490
           LG + +R+V M  GVT++ S K KDEL+++GN +E VS SAAL
Sbjct: 117 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAAL 159


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 37/73 (50%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
 Frame = +1

Query: 46  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV---NPRLLKVEKWFGSKKELA 216
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 217 AVRTVCSHVENMI 255
           A+RT  SHV+N+I
Sbjct: 61  AIRTAISHVQNLI 73



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 29/39 (74%), Positives = 32/39 (82%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 374
           GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK
Sbjct: 75  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 113



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 23/43 (53%), Positives = 32/43 (74%)
 Frame = +2

Query: 362 LG*EIIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAL 490
           LG + +R+V M  GVT++ S K KDEL+++GN +E VS SAAL
Sbjct: 110 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAAL 152


>05_03_0052 +
           7827973-7828031,7829012-7829139,7829243-7829305,
           7830323-7830444,7830557-7830672,7830760-7831567,
           7831800-7832528,7832638-7832859,7833089-7833184,
           7833273-7833467,7834303-7834416,7835368-7835651,
           7836216-7836293,7836326-7836449,7836739-7836786
          Length = 1061

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 412 DSHTRCHLYPSDDFSPKKLRISIIELPS 329
           DSH+R HLYP    SP  + + + E+P+
Sbjct: 593 DSHSRAHLYPR---SPDAMNVFLHEMPN 617


>12_02_0154 + 14494319-14495857
          Length = 512

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +1

Query: 106 PRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKE*LKA 273
           P+ VL+   KH+  D+   +  L ++E+ F +K+ L     V  H +NM++E LK+
Sbjct: 250 PKPVLRP--KHVIGDVGNSDDPLHELEQSFFNKRFLIVFEDVDIHKKNMLEELLKS 303


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 115 VLKRNF-KHLAVDIRMVNPRLLKVE 186
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,818,671
Number of Sequences: 37544
Number of extensions: 321654
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)