Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1228
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         97   7e-21
SB_17647| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-24)                 30   1.2  
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_18784| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     28   5.0  
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)                    28   5.0  
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 28   6.6  
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                27   8.7  
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)         27   8.7  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 43/79 (54%), Positives = 60/79 (75%)
 Frame = +1

Query: 22  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 201
           K I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++  V    ++V+ WF S
Sbjct: 558 KTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFAS 617

Query: 202 KKELAAVRTVCSHVENMIK 258
           +KELA V+T+ +H+ENMIK
Sbjct: 618 RKELACVKTIITHIENMIK 636



 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 26/40 (65%), Positives = 32/40 (80%)
 Frame = +3

Query: 255 KGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 374
           KGV  G++YKMRAVYAHFPIN    E  +++E+RNFLGEK
Sbjct: 636 KGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEK 675


>SB_17647| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-24)
          Length = 436

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 484 CSHPAIYYIKNXDIRKFLDGXLCILRK 564
           C +P IYY KN +IR+ +    CI  K
Sbjct: 405 CFNPVIYYYKNQEIRQAVKKIFCIRHK 431


>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 338 ITLSGDTVNGEVSIHSTHLVLEAFSYSFIMFS 243
           +T+  D   G VS H+THLV  A S +++ F+
Sbjct: 173 LTIHTDHEGGNVSAHTTHLVGSALSDAYLSFA 204


>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 180 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 88
           L  TR+ +  V+S   EV  E S  P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190


>SB_18784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 421 RVNDSHTRCHLYPSDDFSPKKLRISIIELPSV 326
           R++D   RCHLYPS    P  +++S    PS+
Sbjct: 132 RIDDK--RCHLYPSGTKKPGDMKLSSPTSPSI 161


>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 233 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 90
           QT++T A  F D       RRR F+  +S   C + L R+P  P++ T
Sbjct: 85  QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +1

Query: 49  KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 183
           K+ DGL VH+ ++ V  K P+    + KR  + L A+ I + +P + KV
Sbjct: 4   KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52


>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
          Length = 197

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = -2

Query: 171 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 61
           TR YH NV   VF V        F  S G  N HQ  +  DR+P
Sbjct: 57  TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100


>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 507 VVDCWMRAAELETSSKELPSMISSSFCFGELTTV 406
           +VDCW+ +   E S+  LPS   S   F  +TTV
Sbjct: 308 LVDCWIESNPAEMST-SLPSSSISPVAFSTMTTV 340


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 33   SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 140
            S+ ++    R Y PC I SG++  APR    +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 76   VKSRLVTVKGPRGVLKRNFKHL 141
            V++R  TV  PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 1   VKQSPNXKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 114
           ++ +   K++  + K K  DG+ VH K+   TV+ PRG
Sbjct: 98  LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135


>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
          Length = 428

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -3

Query: 302 SIHSTHLVLEAFSYSFIMF--STCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLK 129
           S+ S HL L    Y ++++  + C    L   +SFL P+H  +  R GF   +  A  + 
Sbjct: 185 SVISFHLTLSRKPYYYLLYILTPCSVLCLLTLTSFLIPSH--SGERIGFITTLLLAMTVY 242

Query: 128 FLL 120
            LL
Sbjct: 243 LLL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,542,282
Number of Sequences: 59808
Number of extensions: 375406
Number of successful extensions: 988
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)