Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1228
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 95 3e-20
AF022970-7|AAB69900.2| 322|Caenorhabditis elegans Hypothetical ... 30 1.4
AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a... 28 4.4
AC025726-2|AAO21421.1| 174|Caenorhabditis elegans Male abnormal... 28 4.4
AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal... 28 4.4
AC084159-13|AAK39352.1| 197|Caenorhabditis elegans F-box a prot... 28 5.8
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 27 7.7
U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical pr... 27 7.7
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 95.5 bits (227), Expect = 3e-20
Identities = 40/79 (50%), Positives = 59/79 (74%)
Frame = +1
Query: 22 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 201
K I +N V P+G+T VK+R+V V GPRG ++++F+HL +++ + L+V KWFG
Sbjct: 2 KLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGV 61
Query: 202 KKELAAVRTVCSHVENMIK 258
+KELAA+RTVCSH++NMIK
Sbjct: 62 RKELAAIRTVCSHIKNMIK 80
Score = 67.7 bits (158), Expect = 6e-12
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = +3
Query: 255 KGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 374
KGVT GF+YKMR+VYAHFPIN +GN +EIRNFLGEK
Sbjct: 80 KGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEK 119
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = +2
Query: 362 LG*EIIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 487
LG +I+RRV + GV S QKDE+++EGN ++ VS +AA
Sbjct: 116 LGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAA 157
>AF022970-7|AAB69900.2| 322|Caenorhabditis elegans Hypothetical
protein F13A2.6 protein.
Length = 322
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 424 WRVNDSHTRCHLYPSDDFSPKKL 356
W V+D T C+L+PSD S K+
Sbjct: 71 WMVSDYDTSCYLFPSDSVSSVKM 93
>AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a
protein.
Length = 658
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 269 FSYSFIMFSTCEQTVLTAASSFLDPN 192
FS FI +++CE + A ++F DPN
Sbjct: 7 FSVIFIAYNSCEAANIQADNTFADPN 32
>AC025726-2|AAO21421.1| 174|Caenorhabditis elegans Male abnormal
protein 20, isoform b protein.
Length = 174
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 269 FSYSFIMFSTCEQTVLTAASSFLDPN 192
FS FI +++CE + A ++F DPN
Sbjct: 7 FSVIFIAYNSCEAANIQADNTFADPN 32
>AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal
protein 20, isoform a protein.
Length = 658
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 269 FSYSFIMFSTCEQTVLTAASSFLDPN 192
FS FI +++CE + A ++F DPN
Sbjct: 7 FSVIFIAYNSCEAANIQADNTFADPN 32
>AC084159-13|AAK39352.1| 197|Caenorhabditis elegans F-box a protein
protein 16 protein.
Length = 197
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 540 IQELSDIXILDVVDCWMRAAELETS--SKELPSMISSSFCFGELTTVTP 400
I S+ +LD VD +R+ ++ S S E + CF ELT++ P
Sbjct: 32 IDNTSENLLLDGVDREIRSRRVQASLSSLETREIYLGGICFNELTSILP 80
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 147 NSQVFEVPFENSAGPFNCHQTRFHMDR 67
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 147 NSQVFEVPFENSAGPFNCHQTRFHMDR 67
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical
protein T20B12.3 protein.
Length = 504
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 254 IMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 132
+++ + ++++LT SFL H T+ F R+S +CL
Sbjct: 280 LLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,787
Number of Sequences: 27780
Number of extensions: 283822
Number of successful extensions: 687
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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