Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1228
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...    82   3e-16
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...    78   4e-15
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...    78   4e-15
At1g73380.2 68414.m08494 expressed protein                             29   2.4  
At1g73380.1 68414.m08493 expressed protein                             29   2.4  
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    28   4.1  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    28   5.4  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    27   9.5  
At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7)...    27   9.5  
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    27   9.5  

>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 35/83 (42%), Positives = 59/83 (71%), Gaps = 5/83 (6%)
 Frame = +1

Query: 22  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKVE 186
           K I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK++
Sbjct: 2   KTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKID 61

Query: 187 KWFGSKKELAAVRTVCSHVENMI 255
            WFGS+K  A++RT  SHV+N+I
Sbjct: 62  SWFGSRKTSASIRTALSHVDNLI 84



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 27/39 (69%), Positives = 29/39 (74%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 374
           GVT+GF Y+MR VYAHFPIN      N  IEIRNFLGEK
Sbjct: 86  GVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEK 124



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = +2

Query: 362 LG*EIIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAL 490
           LG + +R+V+M  GV +V S K KDE+I+EGN +E VS S AL
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCAL 163


>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 33/83 (39%), Positives = 59/83 (71%), Gaps = 5/83 (6%)
 Frame = +1

Query: 22  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKVE 186
           K I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK++
Sbjct: 2   KTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKID 61

Query: 187 KWFGSKKELAAVRTVCSHVENMI 255
            WFG++K  A++RT  SHV+N+I
Sbjct: 62  SWFGTRKTSASIRTALSHVDNLI 84



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/39 (69%), Positives = 29/39 (74%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 374
           GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK
Sbjct: 86  GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEK 124



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = +2

Query: 362 LG*EIIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAL 490
           LG + +R+V+M  GVT+V S K KDE++++GN +E VS S AL
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCAL 163


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 33/83 (39%), Positives = 59/83 (71%), Gaps = 5/83 (6%)
 Frame = +1

Query: 22  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKVE 186
           K I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK++
Sbjct: 2   KTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKID 61

Query: 187 KWFGSKKELAAVRTVCSHVENMI 255
            WFG++K  A++RT  SHV+N+I
Sbjct: 62  SWFGTRKTSASIRTALSHVDNLI 84



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/39 (69%), Positives = 29/39 (74%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 374
           GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK
Sbjct: 86  GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEK 124



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = +2

Query: 362 LG*EIIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAL 490
           LG + +R+V+M  GVT+V S K KDE++++GN +E VS S AL
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCAL 163


>At1g73380.2 68414.m08494 expressed protein
          Length = 434

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = -1

Query: 382 SDDFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLSCSLHVNRLSSRRQAPF 203
           S D SPK L ++I  + SVV +++   + T      KP+  P+   +HV+ + +  + P 
Sbjct: 52  SSDPSPKPLSVNIGHIESVV-RILQLPSITGVSRVCKPIPLPIG-GVHVDLVCTLGKVPV 109

Query: 202 WI 197
           WI
Sbjct: 110 WI 111


>At1g73380.1 68414.m08493 expressed protein
          Length = 434

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = -1

Query: 382 SDDFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLSCSLHVNRLSSRRQAPF 203
           S D SPK L ++I  + SVV +++   + T      KP+  P+   +HV+ + +  + P 
Sbjct: 52  SSDPSPKPLSVNIGHIESVV-RILQLPSITGVSRVCKPIPLPIG-GVHVDLVCTLGKVPV 109

Query: 202 WI 197
           WI
Sbjct: 110 WI 111


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +1

Query: 40  QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 183
           +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P L  V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -2

Query: 453 PSMISS-SFCFGELTTVTPGAI 391
           PS+IS+ S  FG +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 219 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 124
           GGK L   + FLN L+E  ++HAN N+ V  VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218


>At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 418

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/57 (17%), Positives = 31/57 (54%)
 Frame = +1

Query: 4   KQSPNXKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL 174
           K+  +  + +  +++++ DG T+H K + + ++    +LK+   +  +++  + P L
Sbjct: 198 KKDEDEAEEIETKEIELEDGETIHAKDKSLPLQTLIDILKQQTGNDNIEVGKIRPSL 254


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 43  KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 153
           +VKI D  T+ V  +L+ V   R  LK  +  L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,947,895
Number of Sequences: 28952
Number of extensions: 262476
Number of successful extensions: 697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)