Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1227
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   0.77 
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   5.5  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   5.5  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    24   7.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   7.2  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    24   9.5  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 112 QLYNSVVVADYDSAVEKSKHLYEEKKS 192
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 281 GALEPKLIGYSMQFILXFXISLFTTFVMTSLFFSSY 174
           G LEPK +GY     +    SL + F   S+F  SY
Sbjct: 70  GLLEPKFLGYFSS--IAISASLSSYFGYASMFHLSY 103


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 147 VVIGDDDAIVKLLLQNVVRDVGICSIQ 67
           VVIGD+  I K +L N V+    CSI+
Sbjct: 371 VVIGDNCRIGKAILANSVKIGNNCSIE 397


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 82  SDVPNDILEEQLYNSVVVADYDSAVEKSKHLY 177
           S +P  I E Q  +     +     EKSKHLY
Sbjct: 129 SHIPGMITENQTNDDAKEVNGSDVDEKSKHLY 160


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 80  IPTSLTTFWRSSFTIASSSPITT 148
           +P + T    S++TI+SS+P+T+
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTS 524



 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 80  IPTSLTTFWRSSFTIASSSPITT 148
           +P + T    S++TI+SS+P+T+
Sbjct: 561 VPYTSTPVTSSNYTISSSTPVTS 583


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 159 FNRTVVIGDDDAIVKLLLQNVVRDVG 82
           FNR  ++  DD  VK  +  + +D+G
Sbjct: 707 FNRASILDPDDWYVKYFIATLEKDMG 732


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,251,383
Number of Sequences: 5004
Number of extensions: 18654
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)