Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1227
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical ...    27   3.6  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas...    26   8.2  
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal...    26   8.2  
AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane cal...    26   8.2  
AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane cal...    26   8.2  
AC006642-6|AAF39829.1|  146|Caenorhabditis elegans Hypothetical ...    26   8.2  

>AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical
           protein Y56A3A.5 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = +3

Query: 228 KXQDELHGVAYQLWLQGSKDIXRDWFPVEF---XLIFAENAIKL---MYKARRSRF 377
           K +D++   AY   L+  K + RDW PV+F    ++F  + +K+    YK  R  F
Sbjct: 3   KMEDKIKLAAYSELLE--KALARDWSPVDFIKNEILFVLDELKMDVDKYKKNREEF 56


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 46  LCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEK-KSEVXTNVVNKL 222
           LC F +       DV     EE+L +   VAD+   V++ K   +E+ K E    +  K 
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKEEKKRKMREKT 441

Query: 223 XXNXK 237
             N K
Sbjct: 442 AYNKK 446


>Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical
           protein F36F2.3b protein.
          Length = 363

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 113 SFTIASSSPITTVRLKRASIYTRRRRAKSXQMS 211
           SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 317


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
            F36F2.3a protein.
          Length = 1128

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 113  SFTIASSSPITTVRLKRASIYTRRRRAKSXQMS 211
            SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 1082


>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1237

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 156 NRTVVIGDDDAIVKLLLQNVVRDVGICSIQRCHE 55
           N  +++GD  AI  L +Q+ VR     +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667


>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform b protein.
          Length = 1234

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 156 NRTVVIGDDDAIVKLLLQNVVRDVGICSIQRCHE 55
           N  +++GD  AI  L +Q+ VR     +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667


>AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform a protein.
          Length = 1160

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 156 NRTVVIGDDDAIVKLLLQNVVRDVGICSIQRCHE 55
           N  +++GD  AI  L +Q+ VR     +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667


>AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform c protein.
          Length = 1137

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 156 NRTVVIGDDDAIVKLLLQNVVRDVGICSIQRCHE 55
           N  +++GD  AI  L +Q+ VR     +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667


>AC006642-6|AAF39829.1|  146|Caenorhabditis elegans Hypothetical
           protein F49H12.3 protein.
          Length = 146

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 96  VRDVGICSIQRCHEKT*NNYSXLHLXSVESC 4
           +RD  IC +Q C  K  +NY    L    SC
Sbjct: 101 LRDQAICMLQLCSNKNDSNYINEMLAKSTSC 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,002,698
Number of Sequences: 27780
Number of extensions: 108071
Number of successful extensions: 347
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)