Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1221
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    28   1.0  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    28   1.3  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    28   1.3  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   1.8  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   4.1  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.1  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.4  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    25   9.4  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 478 SHTH*Y*LHSSFYCRCTYYRCFLIILDHPVLD 383
           S+TH Y +H +  CRC Y   FL +L  P L+
Sbjct: 312 SYTHRYPVHRAIMCRCEY---FLDMLAGPFLE 340


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 396 IQFLIIRSQRKCGTVIGNGFKMSR 325
           +  ++ R+QRK  TVI +GFK+SR
Sbjct: 19  LDVVLSRTQRKTPTVIRSGFKISR 42


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 104 IDNNEQPKLDEKYHDNKMNAKDHNNECGNDVTPQL 208
           +DNN +  +  + +D ++++ D  N   NDVT QL
Sbjct: 291 VDNNGRVWMTSQEYDTEVSSTDERNFRANDVTLQL 325


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 319 VSPAHFESISNNSPTFSLTSNNQELDDLELSKS 417
           V P HFE +   S TF   ++N  L    +SKS
Sbjct: 5   VDPVHFERLKIQSVTFGSANDNASLQVHNVSKS 37


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 319 VSPAHFESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNK 444
           VS  H E   NN+  FSLT++ Q   ++    S +   +D++
Sbjct: 127 VSQIHTEQNFNNNDAFSLTNSQQAFSEIGYDASNWIDELDSQ 168


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 313 LKVSPAHFESISNNSPTFSLTSNNQEL 393
           L+ SP H + +S++  T SL +NN  L
Sbjct: 519 LRGSPIHNQPVSSSKSTASLNTNNNGL 545


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 319 VSPAHFESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNKMNYGVNINEY 474
           VS     +IS+N P+ + +S +Q  +   L+ S+Y +   ++     + NEY
Sbjct: 761 VSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNEY 812


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 110 NNEQPKLDEKYHDNKMNAKDHNNECGNDVTPQLID-DSEVKLKER 241
           NNE+P        +++   D N++  N+ T +L D D E  LK R
Sbjct: 356 NNEEPNSVVAEDGSEIITLDENDQSPNEATEKLRDNDLEESLKMR 400


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 122 PKLDEKYHDNKMNAKDHNNECGNDVTPQLIDDSEVKLKE 238
           P + ++++D K NA+    E       ++I+D   ++KE
Sbjct: 141 PTIKQQFNDRKKNAQIREREALAKREQEMIEDRRQRIKE 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,206
Number of Sequences: 5004
Number of extensions: 37824
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)