Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1221
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 29 3.3
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_29541| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_54669| Best HMM Match : Tropomodulin (HMM E-Value=0.09) 28 5.7
SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 28 7.5
SB_34463| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07) 27 9.9
SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 27 9.9
>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 331 HFESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNKMNYGVNI-NEYEKQLQRYQH 501
HF + S + + S +E+ L+ S S CI+ K N + N+YE LQ +H
Sbjct: 879 HFLNNKYKSVSLNDRSQKEEISRLKGSVQAISQCINEKSNRNNELANQYEGALQLKEH 936
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 191 HFHTHYYGLWHSFYYHDIFHQV 126
H+H YY +H Y+H +HQ+
Sbjct: 938 HYHHPYYPYYHQPYHHHQYHQL 959
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 522 EKKNAIRKQM--LTKAFKLKLLEVENQCNIELLRVK 623
E KN + ++ LT +KLKL E+EN+ ++ RVK
Sbjct: 1961 EDKNELENKIIELTNQYKLKLAELENENDLRNSRVK 1996
>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 110 NNEQPKLDEKYHDNKMNAKDHNNECGND 193
NN + + +NK N+ DHNNE N+
Sbjct: 268 NNVDNNSNNNHGNNKSNSNDHNNENNNN 295
>SB_29541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 418 IYSTCIDNKMNYGVNINEYEKQ 483
IYSTC ++++ V +N+ EKQ
Sbjct: 317 IYSTCAKQRIHFSVAVNDSEKQ 338
>SB_54669| Best HMM Match : Tropomodulin (HMM E-Value=0.09)
Length = 697
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 313 LKVSPAHFESISNNSPTFSLTSNNQEL 393
L++ FE++ NN+ TFSLT +++L
Sbjct: 153 LEIGKVAFENLKNNAVTFSLTDVSEDL 179
>SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1471
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 313 LKVSPAHFESISNNSPTFSLTSNNQEL 393
L++ FE++ NN+ TFSLT +++L
Sbjct: 859 LEIGKVAFENLKNNAVTFSLTDVSEDL 885
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 221 HCHRSIVE*HHFHTHYYGLWHSFYYHDIFHQV*VVRYYL*IL 96
H HR HH H H Y H Y+ DI + ++R++ I+
Sbjct: 331 HRHRHRHRHHHHHHHEYNRRHR-YFTDINITIQIIRHHFIII 371
>SB_34463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 346 SNNSPTFSLTSNNQ-ELDDLELSKSIYSTCIDNKMNYGVNINEYEKQLQRYQH 501
+N +PT + T NN D + + YST D N N + + QR QH
Sbjct: 46 TNTAPTTTTTPNNDYNTSDDYSTNNDYSTSDDYSTNDDYNTKQRLQHQQRLQH 98
>SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07)
Length = 582
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/30 (33%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 107 DNNEQP-KLDEKYHDNKMNAKDHNNECGND 193
DN+++P ++D+ Y D+ + D+N++C +D
Sbjct: 267 DNDDKPDEIDDVYDDDGDDYDDYNDKCDDD 296
>SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1059
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 322 SPAHFESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNKMNYGVNINE 471
S A +ISNN T L + +D+ +L KS+ S +D+ ++ V N+
Sbjct: 46 SLAEITTISNNCKTSPLAKSQLSVDEGDLQKSV-SLELDSVLDLAVRSNQ 94
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 116 EQPKLDEKYHDNKMNAKDHNNECGNDVTPQLIDDSEVKLKERIAQ 250
+Q K+ +K HD K AKD +N Q I D + K AQ
Sbjct: 879 KQDKIKKKKHDKKSKAKDKDNLAKAGKAIQAILDVTTRKKADAAQ 923
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,942,686
Number of Sequences: 59808
Number of extensions: 249424
Number of successful extensions: 882
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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