Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1218
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27) 104 5e-23
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07) 35 0.066
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 34 0.11
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 30 1.9
SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018) 29 3.3
SB_47689| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.57) 29 4.3
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10) 29 4.3
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17) 28 5.7
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 28 7.5
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35) 28 7.5
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_24759| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.59) 28 7.5
SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_31399| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039) 27 9.9
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 27 9.9
SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3) 27 9.9
>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
Length = 527
Score = 104 bits (250), Expect = 5e-23
Identities = 40/49 (81%), Positives = 44/49 (89%)
Frame = +1
Query: 256 CQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEAR 402
CQFAHG ELR L RHPKYKTELCRTFH++GFCPYGPRCHF+HNA+E R
Sbjct: 175 CQFAHGYHELRQLARHPKYKTELCRTFHTIGFCPYGPRCHFIHNADEKR 223
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +1
Query: 286 RNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405
R Q +YKTELCR F G C YG +C F H E R+
Sbjct: 147 RGSQNSSRYKTELCRPFEESGTCKYGDKCQFAHGYHELRQ 186
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGD 253
YKTELCRPFEE+G CKYGD
Sbjct: 155 YKTELCRPFEESGTCKYGD 173
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGDNANLL 268
YKTELCR F G C YG + +
Sbjct: 193 YKTELCRTFHTIGFCPYGPRCHFI 216
>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
Length = 505
Score = 34.7 bits (76), Expect = 0.066
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 313 KTELCRTFHSVGFCPYGPRCHFVH 384
K LCR F + G+C YG +C FVH
Sbjct: 14 KPTLCRYFSANGYCFYGDQCQFVH 37
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 33.9 bits (74), Expect = 0.11
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEE 396
Y+ ++C+ + GFC +G C F+H+ +
Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFLHDRSD 207
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASANY 286
Y+ ++C+ ++E G C +GD+ L ++Y
Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFLHDRSDY 208
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 513 WRCGRAWRSRPVAHIRRHRSA 451
W G +W SRP H RR R+A
Sbjct: 74 WLLGPSWTSRPKGHARRRRNA 94
>SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018)
Length = 541
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 301 HPKYKTELCRTFHSVGFCPYGPRCHFVH 384
HP + CRTF + CPYG C FVH
Sbjct: 444 HPTFP---CRTFPN---CPYGKSCMFVH 465
>SB_47689| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.57)
Length = 295
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 512 GDAGERGDRDPSLIYDAIDPPD 447
GDA R +DP+++ D +DPP+
Sbjct: 30 GDAETRRGKDPAVLLDRLDPPN 51
>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
Length = 508
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 313 KTELCRTFHSVGFCPYGPRCHFVH 384
+ ++CR + G C +G +C FVH
Sbjct: 39 RQKVCRFYAKKGNCRFGEKCRFVH 62
>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
Length = 809
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 515 NGDAGERGDRDPSLIYDAIDPPDESDANEPPGDDG 411
+GDAG+ D + YD D D+ D + DDG
Sbjct: 474 DGDAGDDDDNNDDDSYDDDDDDDDDDDDGDDDDDG 508
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -2
Query: 536 RR*RVGVNGDAGERGDRDPSLIYDAIDPPDESDANEPPGDDG 411
RR G G GERG P I P N PPG G
Sbjct: 535 RRGAPGAKGSRGERGRVGPPGIDGKDGAPGSDGLNGPPGPQG 576
>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
Length = 724
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 156 PPVNRLLRHQPQVATRP--SSADRLKKRGFVN 245
PP RLL H P+++ RP S+ L+K G +N
Sbjct: 454 PPFERLLEHLPRLSPRPYSISSSPLEKPGQLN 485
>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 307 KYKTELCRTFHSVGFCPYGPRCHFVHN 387
K K +C F G C +G +C FVHN
Sbjct: 105 KGKKRVCWKFQK-GKCRFGEKCKFVHN 130
>SB_24759| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.59)
Length = 262
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 239 CKYGDNANLLTASANYAIFSVILNTRRSCVALSIRL-ASVLMDRVAISCITQRKQDAENH 415
C YG + +T +V++ T ++CV++S+ L AS+L+ + SC + N+
Sbjct: 194 CSYGHDTVTVTIQERSGSGTVMIVTIQTCVSISLTLNASLLLSQ---SCFVNGRHFCYNN 250
Query: 416 RRQ 424
+ Q
Sbjct: 251 QTQ 253
>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 524 VGVNGDAGERGDRDPSLIYDAIDPPDESDANEPPGDDG 411
VG++G GE+G R S + I PP PPGD G
Sbjct: 362 VGLDGAEGEQGARGKSGDFGPIGPPGPLG---PPGDRG 396
>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 206 ELCRPFEEAGVCKYGDNANLLTASANYAIFSVILNTRRSCVAL 334
++CR F +G C G+N L + Y + NTR+ V++
Sbjct: 922 DICREFMMSGECHRGENCKLRHPACRYLVRPE--NTRQEAVSI 962
>SB_31399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Frame = -2
Query: 527 RVGVNGDAGERGDRD---PSLIYDAIDPPDESDANEPPGDDGSLRLASSALCTKWQRGP* 357
R GV G AG R + P L + + +++ PG S A SA +W
Sbjct: 30 RQGVPGGAGTRDESSVFVPLLYHPQTNTTQQAEMTREPGTQSSSSAAISAFLRRWNESV- 88
Query: 356 GQKPTE 339
K TE
Sbjct: 89 ASKTTE 94
>SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)
Length = 485
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 343 VGFCPYGPRCHFVHNAEEARRR 408
+G C +GPRC F H + +R
Sbjct: 198 LGRCTFGPRCRFYHPDRDPTKR 219
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 524 VGVNGDAGERGDRDPS 477
+G NGD G+RG+R P+
Sbjct: 672 IGANGDRGKRGERGPN 687
>SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)
Length = 909
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 329 ALSIRLASVLMDRVAISCITQRKQDAENHRRQEVHWHRSHRADLWRRI*ATGR 487
A+SI L+ + RV + + + + RR +HWH LWR + T R
Sbjct: 683 AVSIFLSFISYSRVVVDYVKCLRDSKK--RRGRLHWHMYCMMWLWRSLLFTSR 733
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,134,258
Number of Sequences: 59808
Number of extensions: 418421
Number of successful extensions: 1812
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1803
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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