Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1218
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein ... 71 5e-13
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ... 71 5e-13
At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein ... 44 3e-05
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ... 44 9e-05
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 42 4e-04
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ... 40 0.001
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 39 0.002
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ... 37 0.013
At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ... 34 0.071
At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger ... 34 0.071
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 34 0.094
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.094
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.094
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.094
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ... 33 0.22
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 33 0.22
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 33 0.22
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ... 31 0.50
At5g57790.1 68418.m08529 expressed protein 31 0.87
At2g46250.1 68415.m05751 myosin heavy chain-related contains wea... 30 1.2
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 30 1.2
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 29 2.0
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ... 29 2.0
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 29 2.7
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 29 3.5
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 29 3.5
At5g57370.1 68418.m07168 expressed protein low similarity to nuc... 28 4.7
At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein ... 28 4.7
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 28 4.7
At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ... 28 4.7
At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein ... 28 6.1
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 27 8.1
At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing ... 27 8.1
At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote... 27 8.1
>At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 308
Score = 71.3 bits (167), Expect = 5e-13
Identities = 28/50 (56%), Positives = 36/50 (72%)
Frame = +1
Query: 256 CQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405
CQFAHG++ELR + RHP+YKTE+CR + CPYG RCHF H+ E +
Sbjct: 243 CQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEK 292
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 313 KTELCRTFHSVGFCPYGPRCHFVHNAEEAR 402
KTELC + G CPYG C F H +E R
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELR 253
Score = 31.9 bits (69), Expect = 0.38
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 200 KTELCRPFEEAGVCKYGDN 256
KTELC ++E G C YGD+
Sbjct: 224 KTELCNKWQETGTCPYGDH 242
>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 310
Score = 71.3 bits (167), Expect = 5e-13
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +1
Query: 256 CQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405
CQFAHG+ ELR + RHP+YKTE+CR + CPYG RCHF H+ + R
Sbjct: 253 CQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHFRHSLTDQER 302
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 271 GVRELRNLQ--RHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEAR 402
G RE L+ R KTELC + G C YG C F H +E R
Sbjct: 218 GEREALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELR 263
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 200 KTELCRPFEEAGVCKYGDN 256
KTELC ++E G C YGDN
Sbjct: 234 KTELCNKWQETGACCYGDN 252
>At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 252
Score = 44.4 bits (100), Expect(2) = 3e-05
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 298 RHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 396
+ P +KT +C + + G+CP+G CHF H E
Sbjct: 140 KSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSE 172
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 310 YKTELCRTFHSVGFCPYGPR-CHFVHNAEEAR 402
+KT+LC F + G CPY CHF H+AEE R
Sbjct: 72 FKTKLCFKFRA-GTCPYSASSCHFAHSAEELR 102
Score = 20.6 bits (41), Expect(2) = 3e-05
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 256 CQFAHGVRELR 288
C FAH ELR
Sbjct: 92 CHFAHSAEELR 102
>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 384
Score = 44.0 bits (99), Expect = 9e-05
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405
+KT +C + G+CP+G +CHF H A E R
Sbjct: 261 WKTRICNKWEITGYCPFGAKCHFAHGAAELHR 292
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405
+KT+LC F + G CPY C+F H EE RR
Sbjct: 92 FKTKLCCKFRA-GTCPYITNCNFAHTVEELRR 122
Score = 33.9 bits (74), Expect = 0.094
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARRRE 411
+K C+ F++ CPYG C F+H+ E +R RE
Sbjct: 173 FKGRHCKKFYTEEGCPYGESCTFLHD-EASRNRE 205
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 301 HP--KYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405
HP YKT++C + S G C YG RCHF H E RR
Sbjct: 201 HPGSNYKTKICDRY-SKGNCTYGDRCHFAHGESELRR 236
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 262 FAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 384
F +E+ ++ K++ C F S CP+G CHF+H
Sbjct: 21 FKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLH 61
>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 386
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEE 396
+KT LC F G CP+G +CHF H E
Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHFAHGQAE 298
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 313 KTELCRTFHSVGFCPYGPRCHFVH 384
+ +LCR F CPYG RC+F+H
Sbjct: 185 RMKLCRKFCFGEECPYGDRCNFIH 208
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405
YKT +C F + G C G C+F H E+ R+
Sbjct: 105 YKTRMCAKFRA-GTCRNGELCNFAHGIEDLRQ 135
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 301 HP--KYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405
HP +KT++C F S G C +G RCHF H E R+
Sbjct: 209 HPGSNFKTKICERF-SKGNCTFGDRCHFAHGEAELRK 244
Score = 33.5 bits (73), Expect = 0.12
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 313 KTELCRTFHSVGFCPYGPRCHFVH 384
K++ C F S CP+G CHF+H
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLH 61
>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 393
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 247 WG*CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 396
W C FAH G + R R +Y E+C F G C G C F H E
Sbjct: 101 WTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFE 151
>At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 593
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +1
Query: 319 ELCRTFHSVGFCPYGPRCHFVHNAE 393
+LC F G CP G CHF HNAE
Sbjct: 304 KLCFKFVCSGSCPRGEDCHFQHNAE 328
>At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 404
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +1
Query: 319 ELCRTFHSVGFCPYGPRCHFVHNAE 393
+LC F G CP G CHF HNAE
Sbjct: 115 KLCFKFVCSGSCPRGEDCHFQHNAE 139
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 33.9 bits (74), Expect = 0.094
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 247 WG*CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 396
W C F+H G + R R Y E+C F G C G C F H E
Sbjct: 79 WTDCPFSHPGEKARRRDPRRFHYTGEVCPEFSRHGDCSRGDECGFAHGVFE 129
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 33.9 bits (74), Expect = 0.094
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHN 387
Y+ ++C+ + G+C YG C F+H+
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHD 261
Score = 31.9 bits (69), Expect = 0.38
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASANY 286
Y+ ++C+ ++E G C YGD+ L +Y
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHDRGDY 265
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 33.9 bits (74), Expect = 0.094
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHN 387
Y+ ++C+ + G+C YG C F+H+
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHD 261
Score = 31.9 bits (69), Expect = 0.38
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASANY 286
Y+ ++C+ ++E G C YGD+ L +Y
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHDRGDY 265
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 33.9 bits (74), Expect = 0.094
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHN 387
Y+ ++C+ + G+C YG C F+H+
Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFLHD 226
Score = 31.9 bits (69), Expect = 0.38
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASANY 286
Y+ ++C+ ++E G C YGD+ L +Y
Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFLHDRGDY 230
>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405
YKT+LC F+ G C P C F H E RR
Sbjct: 7 YKTKLCILFNKTGDCS-RPNCTFAHGNAELRR 37
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 32.7 bits (71), Expect = 0.22
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 325 CRTFHSVGFCPYGPRCHFVH 384
C F S GFC +GP C F H
Sbjct: 313 CGNFRSYGFCKFGPNCKFDH 332
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 32.7 bits (71), Expect = 0.22
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 325 CRTFHSVGFCPYGPRCHFVH 384
C F S GFC +GP C F H
Sbjct: 313 CGNFRSYGFCKFGPNCKFDH 332
>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 809
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 304 PKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARRR 408
P +KT LC F C +G C + H E R +
Sbjct: 78 PWWKTSLCSYFRREASCSHGNECKYAHGEAELRMK 112
>At5g57790.1 68418.m08529 expressed protein
Length = 205
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 147 SNAPPVNRLLRHQPQVATRPSSADRLKKRGFVNMGIMPICSRR 275
SN PP+ + P ++PS+ D + GF ++GI + +R
Sbjct: 43 SNFPPLTTEIDTPPPSNSKPSTVDDISMEGFESLGIEKLIKKR 85
>At2g46250.1 68415.m05751 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, muscle
(Swiss-Prot:P05661) [Drosophila melanogaster]
Length = 468
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 365 RVAISCITQRKQDAENHRRQEVHWHRSHRADLWRRI*AT 481
R+ + +R D E+H R +H H RA L R+I AT
Sbjct: 73 RIELRRCRRRDSDVESHSRSPLHDHPPSRASLRRQIAAT 111
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 313 KTELCRTFHSVGFCPYGPRCHFVH 384
+ ELCR F G C YG C F+H
Sbjct: 2 RKELCRNFQR-GSCRYGENCRFLH 24
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 200 KTELCRPFEEAGVCKYGDNANLL 268
+ ELCR F+ G C+YG+N L
Sbjct: 2 RKELCRNFQR-GSCRYGENCRFL 23
>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 580
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +1
Query: 247 WG*CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEA 399
W C F H G R R Y C F G CP G C + H E+
Sbjct: 230 WTECAFVHPGENARRRDPRKYPYTCVPCPEFRK-GSCPKGDSCEYAHGVFES 280
>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 597
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +1
Query: 247 WG*CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEA 399
W C F H G R R Y C F G CP G C + H E+
Sbjct: 233 WTECPFVHPGENARRRDPRKYPYTCVPCPEFRK-GSCPKGDSCEYAHGVFES 283
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 274 VRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 384
+R R P++ ++C F+ GFC +G C + H
Sbjct: 145 LRTSRRSPSLPEFPVKICHYFNK-GFCKHGNNCRYFH 180
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 313 KTELCRTFHSVGFCPYGPRCHFVH 384
KTE F G CPYG +C ++H
Sbjct: 103 KTEKLCKFWVDGNCPYGDKCRYLH 126
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 277 RELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 384
RE + +H + C + +GFCP GP C + H
Sbjct: 104 REQDCVYKHTNEDIKECNMY-KLGFCPNGPDCRYRH 138
>At5g57370.1 68418.m07168 expressed protein low similarity to
nucleic acid binding protein [Homo sapiens] GI:431953
Length = 219
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 517 TPTLHLRCRHQHKPQAFAFRRTNFPRSRKDDR 612
TP H R RH P+ + R + R R DR
Sbjct: 57 TPDHHARARHVRSPERYRSRSRSIDRDRDRDR 88
>At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 245
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 256 CQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHFVHNAEEARRRE 411
C+FAHGV E HP +Y+T C + G C F H E+ R+ E
Sbjct: 112 CEFAHGVFE---YWLHPARYRTRAC----NAGNLCQRKVCFFAHAPEQLRQSE 157
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1
Query: 322 LCRTFHSVGFCPYGPRCHFVHNAE 393
+C + G C +GP C F H+ +
Sbjct: 397 ICTYYSRYGICKFGPACRFDHSVQ 420
>At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 453
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 325 CRTFHSVGFCPYGPRCHFVHN 387
C F + GFC +G C F H+
Sbjct: 313 CGNFKAYGFCKFGANCKFDHS 333
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 325 CRTFHSVGFCPYGPRCHFVHNAE 393
CR F + G C YG C + H E
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKE 289
>At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 356
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 226 RSGGL*IWG*CQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHFVHNAEEAR 402
R GG C+FAHGV E HP +Y+T+ C+ G C C F H+ ++ R
Sbjct: 129 RKGGCKKGDSCEFAHGVFE---CWLHPARYRTQPCK---DGGNC-LRKICFFAHSPDQLR 181
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 322 LCRTFHSVGFCPYGPRCHFVHN 387
+C + G C +GP C F H+
Sbjct: 385 MCTHYSRYGICKFGPACRFDHS 406
>At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing
protein predicted proteins, Arabidopsis thaliana
Length = 381
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 304 PKYKTELCRTFHSVGFCPYGPRCH 375
P++ ++C F+ GFC +G CH
Sbjct: 163 PEFPLKICHYFNK-GFCKHGNNCH 185
>At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein
kinase, putative contains protein kinase domains
Length = 890
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +3
Query: 282 TTQSSASS*IQDGAVSHFPFGWLLSLWTALPFRA*RRGSKTQRTIVARRFIGIALIGRIY 461
TT + AS+ +G V+ FG L+ +LP + + T+ + IGI IG +Y
Sbjct: 559 TTPTQASTESGNGGVT---FGKLVLFSKSLPSKYEDWEAGTKALLDKDNIIGIGSIGAVY 615
Query: 462 GVVYERRVAIA 494
+E V+IA
Sbjct: 616 RASFEGGVSIA 626
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,787,155
Number of Sequences: 28952
Number of extensions: 273811
Number of successful extensions: 1022
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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