Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1212
(551 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light ch... 124 6e-29
Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical pr... 60 1e-09
AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical... 54 7e-08
AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical ... 47 8e-06
AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical ... 47 8e-06
AL161711-1|CAE17960.1| 134|Caenorhabditis elegans Hypothetical ... 30 0.96
AL032639-6|CAA21630.1| 405|Caenorhabditis elegans Hypothetical ... 30 0.96
AF053067-1|AAC35273.1| 405|Caenorhabditis elegans cyclin D prot... 30 0.96
AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp ass... 28 3.9
AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical ... 28 5.1
Z70307-9|CAE54887.1| 246|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z70307-8|CAA94333.2| 248|Caenorhabditis elegans Hypothetical pr... 27 6.8
AF016446-7|AAC24174.1| 330|Caenorhabditis elegans Serpentine re... 27 6.8
>U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light chain
protein 1 protein.
Length = 89
Score = 124 bits (298), Expect = 6e-29
Identities = 54/60 (90%), Positives = 59/60 (98%)
Frame = +2
Query: 74 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
M DRKAVIKNADMS++MQQDA+DCATQALEK+NIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Score = 64.1 bits (149), Expect = 6e-11
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKSG 339
G FGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
>Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical
protein M18.2 protein.
Length = 90
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +2
Query: 74 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
M + K +K DM + + + +A +NI+KD+AAF+K+E DKK+ TWH I G+
Sbjct: 1 MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGK 60
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKSG 339
G FGS V++E HFI +V ++++K G
Sbjct: 59 GKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89
>AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical
protein Y73B6BL.43 protein.
Length = 186
Score = 54.0 bits (124), Expect = 7e-08
Identities = 20/55 (36%), Positives = 36/55 (65%)
Frame = +2
Query: 89 AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
A ++++ M M+Q+A A +++ +++E DIA +K FD++Y P WHCI G+
Sbjct: 58 ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGK 112
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKS 336
G +FGS+VT E FIYF +G +A +LFK+
Sbjct: 111 GKHFGSFVTFEPDSFIYFRIGTIAFMLFKT 140
>AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical
protein Y10G11A.2b protein.
Length = 129
Score = 47.2 bits (107), Expect = 8e-06
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +2
Query: 92 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
+I++ ++ E +++ AL+ IE +IA+F+K++FD KY W C+VGR
Sbjct: 51 IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGR 104
>AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical
protein Y10G11A.2a protein.
Length = 111
Score = 47.2 bits (107), Expect = 8e-06
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +2
Query: 92 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
+I++ ++ E +++ AL+ IE +IA+F+K++FD KY W C+VGR
Sbjct: 33 IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGR 86
>AL161711-1|CAE17960.1| 134|Caenorhabditis elegans Hypothetical
protein Y10G11A.3 protein.
Length = 134
Score = 30.3 bits (65), Expect = 0.96
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +2
Query: 92 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKK 220
+I+ ++ E +++ AL+ IE +IA+F+K++FD K
Sbjct: 50 IIQETNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAK 92
>AL032639-6|CAA21630.1| 405|Caenorhabditis elegans Hypothetical
protein Y38F1A.5 protein.
Length = 405
Score = 30.3 bits (65), Expect = 0.96
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 270 HIRAKIRPTMQCQVGLYFLSN 208
H A + P+MQC +GLY++SN
Sbjct: 237 HKLATLFPSMQCAIGLYYVSN 257
>AF053067-1|AAC35273.1| 405|Caenorhabditis elegans cyclin D
protein.
Length = 405
Score = 30.3 bits (65), Expect = 0.96
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 270 HIRAKIRPTMQCQVGLYFLSN 208
H A + P+MQC +GLY++SN
Sbjct: 237 HKLATLFPSMQCAIGLYYVSN 257
>AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp
associated factor homologprotein 1 protein.
Length = 767
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 402 YPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKIR-PTMQ 238
Y D + + KI +L LTA K + S V+V EV HI+ I TMQ
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPIDFKTMQ 697
>AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical
protein F55A3.1 protein.
Length = 958
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -2
Query: 205 FLDECSYVLFNVKFLERLSCTVNSILLHLFAH--VSILYDCFAITHLVLGLFLLR 47
++D C+ LFN+ +R++ + + +F H V ++Y ++ + ++L +LR
Sbjct: 520 WMDVCTLPLFNITLSQRIATFATAPFMSIFLHWMVGMVYVFYSASFVILLREILR 574
>Z70307-9|CAE54887.1| 246|Caenorhabditis elegans Hypothetical
protein C39E9.8b protein.
Length = 246
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 116 EEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYN 226
EEM+ A DC +KF+ +KK FD+K N
Sbjct: 60 EEMKLQAKDCTVPCFQKFSSITSRPNDLKKCFDEKDN 96
>Z70307-8|CAA94333.2| 248|Caenorhabditis elegans Hypothetical
protein C39E9.8a protein.
Length = 248
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 116 EEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYN 226
EEM+ A DC +KF+ +KK FD+K N
Sbjct: 60 EEMKLQAKDCTVPCFQKFSSITSRPNDLKKCFDEKDN 96
>AF016446-7|AAC24174.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein21 protein.
Length = 330
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = -2
Query: 250 THDAMPGRIVFLVKFFLDECSYVLFNVKFLERLSCTVNSILLHLFAHV--SILYD--CFA 83
+H + + F + F ECS V + F R ++ S H F + ++Y CFA
Sbjct: 84 SHFGINSLVQFYILTFSIECSAVCISEMFYFRYKASLVSYKDHYFTYFLRFLVYSTRCFA 143
Query: 82 ITHLVLGLFLLR*MNKFSR 26
I + + + NKF +
Sbjct: 144 IFDFIFPIVTYQDANKFQQ 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,375,581
Number of Sequences: 27780
Number of extensions: 248481
Number of successful extensions: 818
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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